Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000104.1

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

126444 .. 129257

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000104.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggcgaagaacgacacgtctttgggatcgttgtacgagttcttgaagcggtgccgactcgctgagcacgatggtgaaatcgaacgccgctttgcgctcagcgaacccaaggctgatgaaggcgtgcttgctagtgccatcctcgatcctaaggatgaagtagtgcgacgattcaagcacggtcttgacggaggtcgctggaatttggatcctcaagtcggatctcgcaccggtccttgcatgaccttttccgctctcggtgagcttctcgtcgctgctggctgcatcactgactttgatgagtatcgctcgatgagtttatcttccccggatgtggatgcaaacgatcgaaaggtgaaagtgtatggtaggaattatacattcattgagaccagatggaagaagctcagagttggtgatcttgtcaaggtgcacaaggatgagtactttcttgctgatctgcttttgctttcttcaagctatgaggatggcatttgctatgtggaaactatgaaccttgatggagaaacaaatttaaaattgaaccatgcactggaggcgacatcccatcttcatgatgaaaattccttcgaaagattcagggcagtgatcaagtgtgaggacccaaataaaattctatattcatttgttgggactttgttctataacggcagagaacacccactttccttgcaacagatgctgaaaaatacagaatatgtccatggatttgttgttttcactaggcatgacacagaagtgctgcaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

257

Amino Acids

29.31

Weight (kDa)

5.52

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	254
AciI	CCGC	3 cut(s)	49, 88, 252
AclWI	GGATC	5 cut(s)	34, 140, 203, 216, 229
AcsI	RAATTY	4 cut(s)	202, 532, 583, 633
AfaI	GTAC	2 cut(s)	35, 446
AfiI	CCNNNNNNNGG	3 cut(s)	218, 334, 553
AflIII	ACRYGT	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	46, 175, 477, 544
AjiI	CACGTC	1 cut(s)	18
AleI	CACNNNNGTG	2 cut(s)	72, 758
AluBI	AGCT	3 cut(s)	265, 406, 480
AluI	AGCT	3 cut(s)	265, 406, 480
Alw21I	GWGCWC	2 cut(s)	69, 435
Alw26I	GTCTC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	5 cut(s)	34, 140, 203, 216, 229
AlwNI	CAGNNNCTG	1 cut(s)	703
ApaLI	GTGCAC	1 cut(s)	431
ApeKI	GCWGC	3 cut(s)	275, 282, 763
ApoI	RAATTY	4 cut(s)	202, 532, 583, 633
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	233, 622
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	86, 272, 367, 428
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	2 cut(s)	233, 622
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	69, 435
BbvI	GCAGC	3 cut(s)	262, 269, 750
BccI	CCATC	6 cut(s)	65, 146, 390, 482, 515, 576
BceAI	ACGGC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	132, 744
BisI	GCNGC	4 cut(s)	88, 276, 283, 764
BlpI	GCTNAGC	2 cut(s)	63, 98
BlsI	GCNGC	4 cut(s)	89, 277, 284, 765
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	233, 622
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	233, 622
BmiI	GGNNCC	3 cut(s)	53, 210, 624
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	3 cut(s)	294, 328, 690
BoxI	GACNNNNGTC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	575
Bpu1102I	GCTNAGC	2 cut(s)	63, 98
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	108, 327, 724
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 334, 553
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	558
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	108, 327, 724
BseGI	GGATG	7 cut(s)	138, 160, 337, 343, 445, 493, 563
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	218, 334, 553
BseMII	CTCAG	3 cut(s)	54, 112, 421
BseNI	ACTGG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	262, 269, 750
Bsh1285I	CGRYCG	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	51
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	69, 435
BsiSI	CCGG	2 cut(s)	231, 329
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	218, 334, 553
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	667
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	69, 435
Bsp143I	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
Bsp1720I	GCTNAGC	2 cut(s)	63, 98
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	3 cut(s)	49, 88, 252
BspCNI	CTCAG	3 cut(s)	55, 111, 420
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	53, 210, 624
BspPI	GGATC	5 cut(s)	34, 140, 203, 216, 229
BspT104I	TTCGAA	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	108, 327, 724
BssMI	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
BssT1I	CCWWGG	2 cut(s)	108, 724
Bst4CI	ACNGT	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	125, 129, 280
BstDEI	CTNAG	4 cut(s)	63, 98, 150, 407
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	7 cut(s)	138, 160, 337, 343, 445, 493, 563
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	8 cut(s)	29, 148, 211, 224, 349, 421, 460, 612
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 700
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	262, 269, 750
BstX2I	RGATCY	2 cut(s)	208, 221
BstYI	RGATCY	2 cut(s)	208, 221
Bsu36I	CCTNAGG	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	724
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	7 cut(s)	138, 160, 337, 343, 445, 493, 563
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	288, 551, 612
Cac8I	GCNNGC	3 cut(s)	125, 129, 280
CaiI	CAGNNNCTG	1 cut(s)	703
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	233, 622
Csp6I	GTAC	2 cut(s)	34, 445
CspAI	ACCGGT	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	5 cut(s)	241, 548, 575, 725, 749
CviJI	RGCY	5 cut(s)	113, 265, 282, 406, 480
CviKI_1	RGCY	5 cut(s)	113, 265, 282, 406, 480
CviQI	GTAC	2 cut(s)	34, 445
DdeI	CTNAG	4 cut(s)	63, 98, 150, 407
DpnI	GATC	8 cut(s)	28, 147, 210, 223, 348, 420, 459, 611
DpnII	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
DraI	TTTAAA	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	108, 724
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	233, 622
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	108, 724
ErhI	CCWWGG	2 cut(s)	108, 724
FaeI	CATG	5 cut(s)	244, 551, 578, 728, 752
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	5 cut(s)	240, 547, 574, 724, 748
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	88, 276, 283, 764
FokI	GGATG	7 cut(s)	125, 167, 344, 350, 452, 500, 550
Fsp4HI	GCNGC	4 cut(s)	88, 276, 283, 764
FspBI	CTAG	2 cut(s)	132, 744
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	88, 276, 283, 764
GsuI	CTGGAG	1 cut(s)	575
HapII	CCGG	2 cut(s)	231, 329
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	5 cut(s)	244, 551, 578, 728, 752
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	57, 171, 597
HpaII	CCGG	2 cut(s)	231, 329
HphI	GGTGA	4 cut(s)	86, 272, 367, 428
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	221, 410
Hpy188III	TCNNGA	3 cut(s)	43, 185, 575
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	2 cut(s)	171, 275
HpyAV	CCTTC	2 cut(s)	113, 598
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	7 cut(s)	240, 285, 341, 433, 551, 694, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 700
HpyF3I	CTNAG	4 cut(s)	63, 98, 150, 407
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	5 cut(s)	244, 551, 578, 728, 752
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
LpnPI	CCDG	7 cut(s)	184, 244, 264, 342, 406, 539, 586
Lsp1109I	GCAGC	3 cut(s)	262, 269, 750
LweI	GCATC	3 cut(s)	294, 328, 690
MaeI	CTAG	2 cut(s)	132, 744
MaeII	ACGT	1 cut(s)	17
MalI	GATC	8 cut(s)	28, 147, 210, 223, 348, 420, 459, 611
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
MboII	GAAGA	5 cut(s)	19, 315, 412, 465, 563
MflI	RGATCY	2 cut(s)	208, 221
MhlI	GDGCHC	2 cut(s)	69, 435
MluCI	AATT	6 cut(s)	202, 373, 532, 539, 583, 633
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	152, 185, 222, 478, 550, 613
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	4 cut(s)	72, 438, 573, 758
MspI	CCGG	2 cut(s)	231, 329
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	557, 700
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
NlaIII	CATG	5 cut(s)	244, 551, 578, 728, 752
NlaIV	GGNNCC	3 cut(s)	53, 210, 624
NspV	TTCGAA	1 cut(s)	591
OliI	CACNNNNGTG	2 cut(s)	72, 758
PagI	TCATGA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	171, 597
PflMI	CCANNNNNTGG	1 cut(s)	553
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	89, 277, 284, 765
Ple19I	CGATCG	1 cut(s)	349
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	622
PshAI	GACNNNNGTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	53, 210, 624
PspPI	GGNCC	2 cut(s)	233, 622
PspPPI	RGGWCCY	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	208, 221
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	35, 446
RsaNI	GTAC	2 cut(s)	34, 445
RseI	CAYNNNNRTG	4 cut(s)	72, 438, 573, 758
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	4 cut(s)	88, 276, 283, 764
Sau3AI	GATC	8 cut(s)	26, 145, 208, 221, 346, 418, 457, 609
Sau96I	GGNCC	2 cut(s)	233, 622
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	69, 435
SetI	ASST	9 cut(s)	20, 196, 248, 267, 357, 408, 432, 482, 519
SfaNI	GCATC	3 cut(s)	294, 328, 690
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	2 cut(s)	233, 622
SmiMI	CAYNNNNRTG	4 cut(s)	72, 438, 573, 758
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	6 cut(s)	202, 373, 532, 539, 583, 633
SsiI	CCGC	3 cut(s)	49, 88, 252
SspMI	CTAG	2 cut(s)	132, 744
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	108, 724
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	5 cut(s)	81, 144, 311, 349, 591
TasI	AATT	6 cut(s)	202, 373, 532, 539, 583, 633
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	171, 597
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	3 cut(s)	295, 558, 612
TseI	GCWGC	3 cut(s)	275, 282, 763
TspDTI	ATGAA	7 cut(s)	132, 171, 373, 527, 563, 594, 633
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	3 cut(s)	295, 558, 612
Van91I	CCANNNNNTGG	1 cut(s)	553
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	233, 622
XapI	RAATTY	4 cut(s)	202, 532, 583, 633
XspI	CTAG	2 cut(s)	132, 744
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.