Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Forward (+)

4423858 .. 4437283

Gene Structure 13426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG025500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAACGCTTTATAGAAGAGGCCCTTAAAAGGTTGAAAAAGAAAGAGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTTGTGATCTTGTCAAGGTGCACAAGGATGAATACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGAGATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAATAGCTTAACAAGGAGGCAATCACTTAAAACTGGAATTTTTGTTCTTCAAACCTGCTGCTTTGGTACACCAATTGACAAAGCTAAGTACTTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

142

Amino Acids

16.73

Weight (kDa)

8.86

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	271
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	3 cut(s)	250, 301, 366
AfaI	GTAC	2 cut(s)	397, 419
AfiI	CCNNNNNNNGG	2 cut(s)	30, 271
AgsI	TTSAA	3 cut(s)	37, 262, 380
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	4 cut(s)	124, 198, 336, 413
AluI	AGCT	4 cut(s)	124, 198, 336, 413
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	3 cut(s)	250, 301, 366
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	4 cut(s)	108, 200, 233, 294
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
BmcAI	AGTACT	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 271
Bse1I	ACTGG	2 cut(s)	276, 367
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	55, 163, 211
BseLI	CCNNNNNNNGG	2 cut(s)	30, 271
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	276, 367
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	30, 271
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	136, 175, 281, 327
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	276, 367
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	4 cut(s)	136, 175, 281, 327
BssT1I	CCWWGG	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	125, 414
BstF5I	GGATG	3 cut(s)	55, 163, 211
BstKTI	GATC	4 cut(s)	139, 178, 284, 330
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	136, 175, 281, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	55, 163, 211
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	269, 330
BveI	ACCTGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	396, 418
CviAII	CATG	2 cut(s)	266, 293
CviJI	RGCY	5 cut(s)	23, 124, 198, 336, 413
CviKI_1	RGCY	5 cut(s)	23, 124, 198, 336, 413
CviQI	GTAC	2 cut(s)	396, 418
DdeI	CTNAG	2 cut(s)	125, 414
DpnI	GATC	4 cut(s)	138, 177, 283, 329
DpnII	GATC	4 cut(s)	136, 175, 281, 327
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	269, 296
FaiI	YATR	8 cut(s)	14, 84, 96, 201, 219, 230, 267, 294
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	2 cut(s)	265, 292
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	3 cut(s)	62, 170, 218
Fsp4HI	GCNGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	269, 296
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	151, 398
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	151, 398
HpyCH4V	TGCA	2 cut(s)	151, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	125, 414
Hsp92II	CATG	2 cut(s)	269, 296
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	136, 175, 281, 327
LpnPI	CCDG	4 cut(s)	124, 257, 348, 397
Lsp1109I	GCAGC	1 cut(s)	374
MalI	GATC	4 cut(s)	138, 177, 283, 329
MboI	GATC	4 cut(s)	136, 175, 281, 327
MboII	GAAGA	4 cut(s)	29, 130, 281, 368
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	6 cut(s)	91, 250, 257, 301, 366, 402
MnlI	CCTC	6 cut(s)	13, 40, 49, 196, 268, 339
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	5 cut(s)	27, 254, 338, 357, 427
MslI	CAYNNNNRTG	2 cut(s)	156, 291
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	4 cut(s)	136, 175, 281, 327
NlaIII	CATG	2 cut(s)	269, 296
PagI	TCATGA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	2 cut(s)	397, 419
RsaNI	GTAC	2 cut(s)	396, 418
RseI	CAYNNNNRTG	2 cut(s)	156, 291
SaqAI	TTAA	5 cut(s)	27, 254, 338, 357, 427
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	4 cut(s)	136, 175, 281, 327
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	9 cut(s)	35, 75, 126, 150, 200, 237, 338, 386, 415
SmiMI	CAYNNNNRTG	2 cut(s)	156, 291
Sse9I	AATT	6 cut(s)	91, 250, 257, 301, 366, 402
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	91, 250, 257, 301, 366, 402
TatI	WGTACW	1 cut(s)	417
Tru1I	TTAA	5 cut(s)	27, 254, 338, 357, 427
Tru9I	TTAA	5 cut(s)	27, 254, 338, 357, 427
TscAI	CASTG	2 cut(s)	276, 330
TseI	GCWGC	1 cut(s)	387
TspDTI	ATGAA	6 cut(s)	91, 174, 180, 245, 281, 312
TspRI	CASTG	2 cut(s)	276, 330
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	149
XapI	RAATTY	3 cut(s)	250, 301, 366
XmnI	GAANNNNTTC	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.