Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

30495215 .. 30496994

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGATGTGGAGGCACATAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGTTGATATGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTTCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATTCACTGGAGGTGACATCCCATCTTAATGATGAAAATTCCTTGGAAAGATTTAGGGCAGAGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAAAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGTGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

148

Amino Acids

17.45

Weight (kDa)

5.96

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	205, 256, 306
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	217
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	79, 153
AluI	AGCT	2 cut(s)	79, 153
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	56
Alw44I	GTGCAC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	376
ApaLI	GTGCAC	1 cut(s)	104
ApoI	RAATTY	3 cut(s)	205, 256, 306
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	40, 101, 244
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	4 cut(s)	63, 155, 188, 249
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	261, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	231, 421
BseDI	CCNNGG	2 cut(s)	261, 397
BseGI	GGATG	4 cut(s)	10, 118, 166, 236
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	231, 421
BseSI	GKGCMC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	91, 282
Bsp19I	CCATGG	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	231, 421
BssECI	CCNNGG	2 cut(s)	261, 397
BssMI	GATC	2 cut(s)	91, 282
BssT1I	CCWWGG	2 cut(s)	261, 397
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	4 cut(s)	10, 118, 166, 236
BstKTI	GATC	2 cut(s)	94, 285
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	91, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	4 cut(s)	10, 118, 166, 236
BtsIMutI	CAGTG	2 cut(s)	224, 414
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	2 cut(s)	398, 422
CviJI	RGCY	2 cut(s)	79, 153
CviKI_1	RGCY	2 cut(s)	79, 153
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	93, 284
DpnII	GATC	2 cut(s)	91, 282
DraI	TTTAAA	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	261, 397
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	261, 397
ErhI	CCWWGG	2 cut(s)	261, 397
FaeI	CATG	2 cut(s)	401, 425
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	397, 421
FokI	GGATG	4 cut(s)	17, 125, 173, 223
GsuI	CTGGAG	1 cut(s)	248
Hin1II	CATG	2 cut(s)	401, 425
HphI	GGTGA	3 cut(s)	40, 101, 244
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	106, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	401, 425
Kzo9I	GATC	2 cut(s)	91, 282
LpnPI	CCDG	3 cut(s)	79, 212, 402
LweI	GCATC	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	93, 284
MboI	GATC	2 cut(s)	91, 282
MboII	GAAGA	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	5 cut(s)	46, 205, 212, 256, 306
MnlI	CCTC	4 cut(s)	4, 151, 223, 286
MseI	TTAA	2 cut(s)	209, 246
MslI	CAYNNNNRTG	3 cut(s)	111, 246, 431
MwoI	GCNNNNNNNGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	2 cut(s)	91, 282
NlaIII	CATG	2 cut(s)	401, 425
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	232
OliI	CACNNNNGTG	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	3 cut(s)	111, 246, 431
SaqAI	TTAA	2 cut(s)	209, 246
Sau3AI	GATC	2 cut(s)	91, 282
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	30, 81, 105, 155, 192, 234
SfaNI	GCATC	1 cut(s)	363
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	3 cut(s)	111, 246, 431
Sse9I	AATT	5 cut(s)	46, 205, 212, 256, 306
StyI	CCWWGG	2 cut(s)	261, 397
TaqI	TCGA	1 cut(s)	22
TasI	AATT	5 cut(s)	46, 205, 212, 256, 306
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	209, 246
Tru9I	TTAA	2 cut(s)	209, 246
TscAI	CASTG	2 cut(s)	231, 421
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	5 cut(s)	46, 135, 200, 267, 306
TspRI	CASTG	2 cut(s)	231, 421
Van91I	CCANNNNNTGG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	205, 256, 306
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.