Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

4537766 .. 4539862

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTTGCCGGTGCCATCCTCGATCCTGAGGATGAAGTAGCGCGACGATTCGAGCACTGTCTTGACGGAGGTCGCTGGAATTTGGATCCTCCAGTCAGATCTCGCACCGGTCCTTGCACGACCTTTTCCGCTCTCGGCGAGCTTCTCGTCGCTGCTGGCTGCATCACTGACTTTGATGAGTACTGCTCGATGAGTTTATCTTCCCCGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGTTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAGAATTTCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATATCCATGGATTTGTTATTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

216

Amino Acids

24.69

Weight (kDa)

5.26

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	129, 640
AclWI	GGATC	3 cut(s)	17, 80, 93
AcsI	RAATTY	4 cut(s)	79, 409, 460, 510
AfaI	GTAC	2 cut(s)	182, 323
AfiI	CCNNNNNNNGG	2 cut(s)	211, 430
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	421
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	3 cut(s)	142, 283, 357
AluI	AGCT	3 cut(s)	142, 283, 357
Alw21I	GWGCWC	2 cut(s)	57, 312
Alw26I	GTCTC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	17, 80, 93
AlwNI	CAGNNNCTG	1 cut(s)	580
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	152, 159
ApoI	RAATTY	4 cut(s)	79, 409, 460, 510
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	110, 499
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	244, 305
AvaII	GGWCC	2 cut(s)	110, 499
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	57, 312
BbvI	GCAGC	2 cut(s)	139, 146
BccI	CCATC	5 cut(s)	23, 267, 359, 392, 453
BceAI	ACGGC	1 cut(s)	562
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	3 cut(s)	153, 160, 641
BlsI	GCNGC	3 cut(s)	154, 161, 642
BmcAI	AGTACT	2 cut(s)	182, 323
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	2 cut(s)	110, 499
BmgT120I	GGNCC	2 cut(s)	110, 499
BmiI	GGNNCC	3 cut(s)	13, 87, 501
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	171, 567
BmuI	ACTGGG	1 cut(s)	630
BoxI	GACNNNNGTC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	2 cut(s)	75, 452
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	204, 601
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 430
Bse118I	RCCGGY	2 cut(s)	8, 107
Bse1I	ACTGG	3 cut(s)	92, 435, 625
Bse21I	CCTNAGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	204, 601
BseGI	GGATG	6 cut(s)	15, 37, 214, 322, 370, 440
BseLI	CCNNNNNNNGG	2 cut(s)	211, 430
BseMII	CTCAG	2 cut(s)	18, 298
BseNI	ACTGG	3 cut(s)	92, 435, 625
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	139, 146
Bsh1236I	CGCG	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	57, 312
BsiSI	CCGG	3 cut(s)	9, 108, 206
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	211, 430
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	57, 312
Bsp143I	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	2 cut(s)	129, 640
BspCNI	CTCAG	2 cut(s)	19, 297
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	13, 87, 501
BspPI	GGATC	3 cut(s)	17, 80, 93
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	8, 107
BsrI	ACTGG	3 cut(s)	92, 435, 625
BssAI	RCCGGY	2 cut(s)	8, 107
BssECI	CCNNGG	2 cut(s)	204, 601
BssMI	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
BssT1I	CCWWGG	1 cut(s)	601
Bst4CI	ACNGT	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	6, 140, 157
BstDEI	CTNAG	2 cut(s)	27, 284
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	6 cut(s)	15, 37, 214, 322, 370, 440
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	6 cut(s)	25, 88, 101, 298, 337, 489
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 577
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	312
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	139, 146
BstX2I	RGATCY	2 cut(s)	85, 98
BstYI	RGATCY	2 cut(s)	85, 98
Bsu36I	CCTNAGG	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	6 cut(s)	15, 37, 214, 322, 370, 440
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	5 cut(s)	55, 165, 428, 489, 618
Cac8I	GCNNGC	3 cut(s)	6, 140, 157
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	2 cut(s)	8, 107
Cfr13I	GGNCC	2 cut(s)	110, 499
Csp6I	GTAC	2 cut(s)	181, 322
CspAI	ACCGGT	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	4 cut(s)	425, 452, 602, 626
CviJI	RGCY	4 cut(s)	142, 159, 283, 357
CviKI_1	RGCY	4 cut(s)	142, 159, 283, 357
CviQI	GTAC	2 cut(s)	181, 322
DdeI	CTNAG	2 cut(s)	27, 284
DpnI	GATC	6 cut(s)	24, 87, 100, 297, 336, 488
DpnII	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
DraI	TTTAAA	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	110, 499
Eco81I	CCTNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	4 cut(s)	428, 455, 605, 629
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	4 cut(s)	424, 451, 601, 625
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	153, 160, 641
FokI	GGATG	6 cut(s)	2, 44, 221, 329, 377, 427
Fsp4HI	GCNGC	3 cut(s)	153, 160, 641
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	153, 160, 641
GsuI	CTGGAG	2 cut(s)	75, 452
HapII	CCGG	3 cut(s)	9, 108, 206
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	428, 455, 605, 629
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	9, 108, 206
HphI	GGTGA	2 cut(s)	244, 305
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	98, 287
Hpy188III	TCNNGA	3 cut(s)	26, 62, 452
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	48, 152
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	117, 162, 310, 428, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 577
HpyF3I	CTNAG	2 cut(s)	27, 284
Hsp92II	CATG	4 cut(s)	428, 455, 605, 629
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
Lsp1109I	GCAGC	2 cut(s)	139, 146
LweI	GCATC	2 cut(s)	171, 567
MalI	GATC	6 cut(s)	24, 87, 100, 297, 336, 488
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
MboII	GAAGA	3 cut(s)	192, 289, 440
MflI	RGATCY	2 cut(s)	85, 98
MhlI	GDGCHC	2 cut(s)	57, 312
MluCI	AATT	6 cut(s)	79, 250, 409, 416, 460, 510
MnlI	CCTC	8 cut(s)	22, 29, 62, 99, 208, 355, 427, 490
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	3 cut(s)	315, 450, 635
MspI	CCGG	3 cut(s)	9, 108, 206
MspR9I	CCNGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	434, 577
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
NlaIII	CATG	4 cut(s)	428, 455, 605, 629
NlaIV	GGNNCC	3 cut(s)	13, 87, 501
NmeAIII	GCCGAG	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	430
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	154, 161, 642
PpuMI	RGGWCCY	1 cut(s)	499
PshAI	GACNNNNGTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	13, 87, 501
PspPI	GGNCC	2 cut(s)	110, 499
PspPPI	RGGWCCY	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	85, 98
RsaI	GTAC	2 cut(s)	182, 323
RsaNI	GTAC	2 cut(s)	181, 322
RseI	CAYNNNNRTG	3 cut(s)	315, 450, 635
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	3 cut(s)	153, 160, 641
Sau3AI	GATC	6 cut(s)	22, 85, 98, 295, 334, 486
Sau96I	GGNCC	2 cut(s)	110, 499
ScaI	AGTACT	2 cut(s)	182, 323
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	57, 312
SetI	ASST	8 cut(s)	73, 125, 144, 234, 285, 309, 359, 396
SfaNI	GCATC	2 cut(s)	171, 567
SinI	GGWCC	2 cut(s)	110, 499
SmiMI	CAYNNNNRTG	3 cut(s)	315, 450, 635
Sse9I	AATT	6 cut(s)	79, 250, 409, 416, 460, 510
SsiI	CCGC	2 cut(s)	129, 640
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	21, 51, 188, 226
TasI	AATT	6 cut(s)	79, 250, 409, 416, 460, 510
TatI	WGTACW	2 cut(s)	180, 321
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	5 cut(s)	62, 172, 435, 489, 625
TseI	GCWGC	2 cut(s)	152, 159
TspDTI	ATGAA	6 cut(s)	48, 250, 339, 404, 440, 510
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	5 cut(s)	62, 172, 435, 489, 625
Van91I	CCANNNNNTGG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	110, 499
XapI	RAATTY	4 cut(s)	79, 409, 460, 510
ZrmI	AGTACT	2 cut(s)	182, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.