Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

32448040 .. 32450813

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG184700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACCTTTTCCGCTCTCGGTGAGCTTCTCGTCGCTGCTGGCTGCATCACTGACTTTGATGAGTACCGCTCGATGAGTTTATCTTCCCCGAATGTGGATGCAAACGATCGAAATGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTACTTTTGCTTTCTTCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTCAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

177

Amino Acids

20.3

Weight (kDa)

5.32

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	2 cut(s)	14, 69
AciI	CCGC	3 cut(s)	12, 67, 523
AcsI	RAATTY	3 cut(s)	292, 343, 393
AfaI	GTAC	2 cut(s)	65, 206
AfiI	CCNNNNNNNGG	2 cut(s)	94, 313
AgsI	TTSAA	2 cut(s)	237, 304
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	3 cut(s)	25, 166, 240
AluI	AGCT	3 cut(s)	25, 166, 240
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	463
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	35, 42
ApoI	RAATTY	3 cut(s)	292, 343, 393
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	32, 188
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	22, 29
BccI	CCATC	4 cut(s)	150, 242, 275, 336
BceAI	ACGGC	1 cut(s)	445
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	3 cut(s)	36, 43, 524
BlsI	GCNGC	3 cut(s)	37, 44, 525
BmcAI	AGTACT	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	54, 88, 450
BmuI	ACTGGG	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	348, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 313
Bse1I	ACTGG	2 cut(s)	318, 508
BseDI	CCNNGG	2 cut(s)	348, 484
BseGI	GGATG	4 cut(s)	103, 205, 253, 323
BseLI	CCNNNNNNNGG	2 cut(s)	94, 313
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	2 cut(s)	318, 508
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	22, 29
Bsh1285I	CGRYCG	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	94, 313
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	106, 178, 217, 369
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	3 cut(s)	12, 67, 523
BspCNI	CTCAG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	2 cut(s)	14, 69
BsrI	ACTGG	2 cut(s)	318, 508
BssECI	CCNNGG	2 cut(s)	348, 484
BssMI	GATC	4 cut(s)	106, 178, 217, 369
BssT1I	CCWWGG	2 cut(s)	348, 484
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	4 cut(s)	103, 205, 253, 323
BstKTI	GATC	4 cut(s)	109, 181, 220, 372
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	106, 178, 217, 369
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 460
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	22, 29
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	4 cut(s)	103, 205, 253, 323
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	4 cut(s)	48, 311, 372, 501
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	463
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	64, 205
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	4 cut(s)	308, 335, 485, 509
CviJI	RGCY	4 cut(s)	25, 42, 166, 240
CviKI_1	RGCY	4 cut(s)	25, 42, 166, 240
CviQI	GTAC	2 cut(s)	64, 205
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	108, 180, 219, 371
DpnII	GATC	4 cut(s)	106, 178, 217, 369
DraI	TTTAAA	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	348, 484
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	348, 484
ErhI	CCWWGG	2 cut(s)	348, 484
FaeI	CATG	4 cut(s)	311, 338, 488, 512
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	307, 334, 484, 508
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	36, 43, 524
FokI	GGATG	4 cut(s)	110, 212, 260, 310
Fsp4HI	GCNGC	3 cut(s)	36, 43, 524
GluI	GCNGC	3 cut(s)	36, 43, 524
GsuI	CTGGAG	1 cut(s)	335
Hin1II	CATG	4 cut(s)	311, 338, 488, 512
HinfI	GANTC	1 cut(s)	357
HphI	GGTGA	2 cut(s)	32, 188
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	45, 101, 193, 311, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 460
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	311, 338, 488, 512
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	106, 178, 217, 369
LpnPI	CCDG	5 cut(s)	24, 166, 299, 346, 489
Lsp1109I	GCAGC	2 cut(s)	22, 29
LweI	GCATC	3 cut(s)	54, 88, 450
MalI	GATC	4 cut(s)	108, 180, 219, 371
MbiI	CCGCTC	2 cut(s)	14, 69
MboI	GATC	4 cut(s)	106, 178, 217, 369
MboII	GAAGA	4 cut(s)	75, 172, 225, 323
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	5 cut(s)	133, 292, 299, 343, 393
MnlI	CCTC	3 cut(s)	238, 310, 373
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	3 cut(s)	198, 333, 518
MwoI	GCNNNNNNNGC	2 cut(s)	317, 460
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	4 cut(s)	106, 178, 217, 369
NlaIII	CATG	4 cut(s)	311, 338, 488, 512
NlaIV	GGNNCC	1 cut(s)	384
OliI	CACNNNNGTG	1 cut(s)	518
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	37, 44, 525
Ple19I	CGATCG	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	65, 206
RsaNI	GTAC	2 cut(s)	64, 205
RseI	CAYNNNNRTG	3 cut(s)	198, 333, 518
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	3 cut(s)	36, 43, 524
Sau3AI	GATC	4 cut(s)	106, 178, 217, 369
Sau96I	GGNCC	1 cut(s)	382
ScaI	AGTACT	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	8, 27, 168, 192, 242, 279
SfaNI	GCATC	3 cut(s)	54, 88, 450
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	3 cut(s)	198, 333, 518
Sse9I	AATT	5 cut(s)	133, 292, 299, 343, 393
SsiI	CCGC	3 cut(s)	12, 67, 523
StyI	CCWWGG	2 cut(s)	348, 484
TaqI	TCGA	2 cut(s)	71, 109
TasI	AATT	5 cut(s)	133, 292, 299, 343, 393
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	4 cut(s)	55, 318, 372, 508
TseI	GCWGC	2 cut(s)	35, 42
TspDTI	ATGAA	5 cut(s)	133, 287, 323, 354, 393
TspRI	CASTG	4 cut(s)	55, 318, 372, 508
Van91I	CCANNNNNTGG	1 cut(s)	313
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	3 cut(s)	292, 343, 393
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.