Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001128

Physical Location & Seq

Genomic Coordinates Reverse (-)

4256374 .. 4260265

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG022900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCTGCATAGGCAAAAACCTGATATGGCTTCTGCCACCTCTAGTAAATGGTTGCCCCTTCACACTCTTGCCGTATCAGGAGAATATTACATTATGCACGCTTTATCAAAACATGAAGCTGATATTAATGCTGCGGATAAGGATGATTGGACTGTTCTTGACAAGGCAATTATCGGTAAAAACCAGGCCATTACAGACTATCTTCTCAGAGATTCGGCTAATCCATTTGTTCGTGATAAAGGGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCAACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTCGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

209

Amino Acids

23.99

Weight (kDa)

6.3

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66055 AT5G66055
fragaria_vesca	FvH4_1g10990 FvH4_1g10990
malus_domestica	MD15G1236900.v1.1
prunus_persica	Prupe.7G175600_v2.0.a1
pyrus_communis	pycom15g21070
rosa_chinensis	RchiOBHm_Chr1g0316921 RchiOBHm_Chr1g0316981 RchiOBHm_Chr2g0098251 RchiOBHm_Chr2g0145411 RchiOBHm_Chr4g0390291 RchiOBHm_Chr5g0073551
rosa_laevigata	RLG00000001656 RLG00000016779 RLG00000027817 RLG00000030637 RLG00000032089
rosa_multiflora	Rmu_co8173478.1_g000001 Rmu_sc0000104.1_g000031 Rmu_sc0000712.1_g000024 Rmu_sc0001298.1_g000058 Rmu_sc0002048.1_g000015 Rmu_sc0002398.1_g000019 Rmu_sc0004138.1_g000005 Rmu_sc0007472.1_g000006 Rmu_sc0009922.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094620 Rroxscaffold_2G00144120
rosa_rugosa	Rorug02G0071600 Rorug02G0547800 Rorug04G0008500 Rorug04G0008600 Rorug04G0008600 Rorug04G0208000 Rorug05G0455100.1
rosa_samantha	Rh1AG024600 Rh1AG024700 Rh1CG022000 Rh1CG022900 Rh1DG021700 Rh2AG118600 Rh2BG121700 Rh2BG300700 Rh2BG456300 Rh2CG123300 Rh2CG279400 Rh2DG123300 Rh2DG466200 Rh4AG245100 Rh4BG023700 Rh4BG025500 Rh4BG250300 Rh4DG100600 Rh5DG257900 Rh6AG184700
rosa_wichuraiana	Rw1G001670 Rw2G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	466
AciI	CCGC	1 cut(s)	134
AcsI	RAATTY	3 cut(s)	445, 496, 546
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	119, 319, 393
AluI	AGCT	3 cut(s)	119, 319, 393
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	4, 131
ApoI	RAATTY	3 cut(s)	445, 496, 546
AseI	ATTAAT	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	280, 341
AvaII	GGWCC	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	4 cut(s)	303, 395, 428, 489
BceAI	ACGGC	2 cut(s)	56, 598
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	5, 132
BlsI	GCNGC	2 cut(s)	6, 133
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	5 cut(s)	148, 250, 358, 406, 476
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	220, 334
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	331, 370, 522
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	219, 333
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	331, 370, 522
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	206, 320
BstF5I	GGATG	5 cut(s)	148, 250, 358, 406, 476
BstKTI	GATC	3 cut(s)	334, 373, 525
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	331, 370, 522
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 470, 613
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	5 cut(s)	148, 250, 358, 406, 476
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	464, 525
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	3 cut(s)	113, 461, 488
CviJI	RGCY	6 cut(s)	29, 119, 188, 218, 319, 393
CviKI_1	RGCY	6 cut(s)	29, 119, 188, 218, 319, 393
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	206, 320
DpnI	GATC	3 cut(s)	333, 372, 524
DpnII	GATC	3 cut(s)	331, 370, 522
DraI	TTTAAA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	116, 464, 491
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	3 cut(s)	112, 460, 487
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	5, 132
FokI	GGATG	5 cut(s)	155, 257, 365, 413, 463
Fsp4HI	GCNGC	2 cut(s)	5, 132
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	2 cut(s)	5, 132
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	116, 464, 491
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	2 cut(s)	280, 341
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	209, 323
Hpy188III	TCNNGA	4 cut(s)	78, 158, 233, 488
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	5 cut(s)	7, 97, 346, 464, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 470, 613
HpyF3I	CTNAG	2 cut(s)	206, 320
Hsp92II	CATG	3 cut(s)	116, 464, 491
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	331, 370, 522
LpnPI	CCDG	6 cut(s)	33, 63, 170, 197, 319, 452
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	1 cut(s)	42
MalI	GATC	3 cut(s)	333, 372, 524
MboI	GATC	3 cut(s)	331, 370, 522
MboII	GAAGA	3 cut(s)	194, 325, 476
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	6 cut(s)	168, 286, 445, 452, 496, 546
MnlI	CCTC	5 cut(s)	49, 244, 391, 463, 526
MseI	TTAA	2 cut(s)	126, 449
MslI	CAYNNNNRTG	2 cut(s)	351, 486
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	10, 470, 613
NdeII	GATC	3 cut(s)	331, 370, 522
NlaIII	CATG	3 cut(s)	116, 464, 491
NlaIV	GGNNCC	1 cut(s)	537
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	6, 133
PpuMI	RGGWCCY	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	535
PspPPI	RGGWCCY	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	616
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	351, 486
SaqAI	TTAA	2 cut(s)	126, 449
SatI	GCNGC	2 cut(s)	5, 132
Sau3AI	GATC	3 cut(s)	331, 370, 522
Sau96I	GGNCC	1 cut(s)	535
ScaI	AGTACT	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	22, 41, 121, 270, 321, 345, 395, 432
SfaNI	GCATC	1 cut(s)	603
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	351, 486
Sse9I	AATT	6 cut(s)	168, 286, 445, 452, 496, 546
SsiI	CCGC	1 cut(s)	134
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	262
TasI	AATT	6 cut(s)	168, 286, 445, 452, 496, 546
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	126, 449
Tru9I	TTAA	2 cut(s)	126, 449
TscAI	CASTG	2 cut(s)	471, 525
TseI	GCWGC	2 cut(s)	4, 131
TspDTI	ATGAA	7 cut(s)	129, 286, 375, 440, 476, 507, 546
TspRI	CASTG	2 cut(s)	471, 525
Van91I	CCANNNNNTGG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	535
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	3 cut(s)	445, 496, 546
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.