Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

11116909 .. 11118084

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18831.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTATGCTTCATGTTGAAGATATCTACAGTCTCAAAAAGCTCTTACATATGTAGAGCATACAACATGTCTGAATATTTGCAGAGGACATTCACTTCTACAGCAGGGTTTGCAGAGGGGTTCACTTCTTCAGCTCCGAATTCTGTTTGCTGTTACATCCTTCGCAGAGGGGTCGCCGAGGTGCTGCTTGGTTGTTATGCCAAGTGCATTGATCTCTTGAGGGAGAAAGAGCGCGACATCTGGAATGCCATCAAGTTTGGTTCTGTGCTGGAAAATGTCATATTCGATAAGCGTACACGAGAGGTGGATTATAATGATGGTTCTATTACTGAGAATACTCGTGCAGCCTATCCCATTGAGTACATCCCAAATGCCAAGATACCATGCGTTGGTCCTCACCCAAAGAATGTGATACTTTTAGCATGTGATGCATTTGGTGTACTCCCACCTGTGAGCAAGTTAAACTTGGCACAGACCATGTGCCATTTCATCAGTGGCTATACTGCTCGGGTTGCTGGAACCGAAGAGGGTGTGAAGGAGCCAAGGGCAACATTCTCGGCTTGCTTTGGTGCTGCGTTTTTGATGTTGCATCCTACCAAGTATGCAGCAGTGTTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTAGTTAACATGGGATGGTCTGGTGGAAGGTATGGAACGGGAAAGCACATTAAGCTATCTTACACCCGGAAAATCATTTGTTGCCATACACTCTGGCAGCCTTTGGAATGCAAATTACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

259

Amino Acids

28.73

Weight (kDa)

8.91

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	56 - 243	5.4e-92	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	295, 362, 441
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	3 cut(s)	42, 134, 706
AluI	AGCT	3 cut(s)	42, 134, 706
Alw26I	GTCTC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	507
ApeKI	GCWGC	5 cut(s)	184, 344, 572, 605, 748
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	392
BauI	CACGAG	2 cut(s)	297, 339
BbvI	GCAGC	5 cut(s)	171, 356, 559, 617, 760
BccI	CCATC	3 cut(s)	257, 311, 660
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 537, 571
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	2 cut(s)	27, 99
BisI	GCNGC	5 cut(s)	185, 345, 573, 606, 749
BlsI	GCNGC	5 cut(s)	186, 346, 574, 607, 750
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	520, 540
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	3 cut(s)	418, 598, 615
BpuEI	CTTGAG	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	177, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	177, 542
BseGI	GGATG	4 cut(s)	156, 363, 589, 671
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	321, 609
BseXI	GCAGC	5 cut(s)	171, 356, 559, 617, 760
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	250, 764
BsoBI	CYCGRG	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	322, 610
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	520, 540
BssECI	CCNNGG	2 cut(s)	177, 542
BssMI	GATC	1 cut(s)	211
BssSI	CACGAG	2 cut(s)	297, 339
BssT1I	CCWWGG	1 cut(s)	542
Bst2BI	CACGAG	2 cut(s)	297, 339
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	2 cut(s)	110, 428
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	2 cut(s)	330, 618
BstF5I	GGATG	4 cut(s)	156, 363, 589, 671
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 428, 512, 614, 703
BstNSI	RCATGY	2 cut(s)	70, 426
BstSCI	CCNGG	1 cut(s)	716
BstSFI	CTRYAG	2 cut(s)	27, 99
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	5 cut(s)	171, 356, 559, 617, 760
BtsCI	GGATG	4 cut(s)	156, 363, 589, 671
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	499, 615
Cac8I	GCNNGC	1 cut(s)	562
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	294, 361, 440
CviAII	CATG	8 cut(s)	13, 67, 384, 423, 478, 635, 648, 661
CviQI	GTAC	3 cut(s)	294, 361, 440
DdeI	CTNAG	2 cut(s)	330, 618
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	542
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	8 cut(s)	16, 70, 387, 426, 481, 638, 651, 664
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	8 cut(s)	12, 66, 383, 422, 477, 634, 647, 660
FauNDI	CATATG	1 cut(s)	50
Fnu4HI	GCNGC	5 cut(s)	185, 345, 573, 606, 749
FokI	GGATG	4 cut(s)	143, 350, 576, 678
Fsp4HI	GCNGC	5 cut(s)	185, 345, 573, 606, 749
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	5 cut(s)	185, 345, 573, 606, 749
HapII	CCGG	1 cut(s)	718
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	8 cut(s)	16, 70, 387, 426, 481, 638, 651, 664
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	718
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	4 cut(s)	123, 296, 440, 658
Hpy188I	TCNGA	2 cut(s)	73, 138
Hpy188III	TCNNGA	2 cut(s)	217, 241
Hpy8I	GTNNAC	4 cut(s)	123, 296, 440, 658
HpyAV	CCTTC	3 cut(s)	170, 529, 672
HpyCH4III	ACNGT	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 428, 512, 614, 703
HpyF3I	CTNAG	2 cut(s)	330, 618
Hsp92II	CATG	8 cut(s)	16, 70, 387, 426, 481, 638, 651, 664
HspAI	GCGC	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	658
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	139, 538
LpnPI	CCDG	8 cut(s)	90, 226, 254, 462, 501, 657, 730, 731
Lsp1109I	GCAGC	5 cut(s)	171, 356, 559, 617, 760
LweI	GCATC	3 cut(s)	418, 598, 615
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	31, 120, 536, 634
MluCI	AATT	2 cut(s)	139, 764
MnlI	CCTC	8 cut(s)	78, 109, 161, 172, 213, 295, 405, 520
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	3 cut(s)	461, 657, 702
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	1 cut(s)	718
Mva1269I	GAATGC	2 cut(s)	250, 764
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	110, 428, 512, 614, 703
NciI	CCSGG	1 cut(s)	718
NdeI	CATATG	1 cut(s)	50
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	8 cut(s)	16, 70, 387, 426, 481, 638, 651, 664
NlaIV	GGNNCC	2 cut(s)	520, 540
NmeAIII	GCCGAG	2 cut(s)	202, 536
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	70, 426
PciI	ACATGT	1 cut(s)	66
PctI	GAATGC	2 cut(s)	250, 764
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	186, 346, 574, 607, 750
PscI	ACATGT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	520, 540
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	3 cut(s)	295, 362, 441
RsaNI	GTAC	3 cut(s)	294, 361, 440
SaqAI	TTAA	3 cut(s)	461, 657, 702
SatI	GCNGC	5 cut(s)	185, 345, 573, 606, 749
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	718
SetI	ASST	7 cut(s)	44, 136, 183, 306, 451, 683, 708
SfaNI	GCATC	3 cut(s)	418, 598, 615
SfcI	CTRYAG	2 cut(s)	27, 99
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	139, 764
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	139, 764
TatI	WGTACW	2 cut(s)	360, 439
Tru1I	TTAA	3 cut(s)	461, 657, 702
Tru9I	TTAA	3 cut(s)	461, 657, 702
TscAI	CASTG	2 cut(s)	499, 615
TseI	GCWGC	5 cut(s)	184, 344, 572, 605, 748
TspDTI	ATGAA	1 cut(s)	478
TspRI	CASTG	2 cut(s)	499, 615
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	70, 426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XspI	CTAG	1 cut(s)	653
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.