Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

21140608 .. 21146004

Gene Structure 5397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGTCATGGCTATGGTGGGTTGTATCTGGTGCAGAGCTATATGAGCAGGCGATAAATAATGAAAAGGGGTCGTTCGTTACGTCAACAGGCGCATTAGCAACACTTTCTGGAGCCAAGACAGGTCGGTCTCCAAGAGATAAACGCGTCGTCAAGGATGAGACCACAGAAGAGGAGCTTTGGTGGGGAAGGGGTTCACCAAACATTGAAATGGACGAGCACACTTTCATGGTCAACAGGGAAAGAGCTGTGGATTACCTGAATTCTTTGGACAAGGTCTTTGTAAATGACCAATACTTGAACTGGGATCCAGAAAACAGAATCAAAGTGCGGATTGTCTCTGCCAGGGCTTATCATTCTTTGTTCATGCACAACATGTGTATCCGACCCAGTCCTGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACTATTTACAATGCTGGTCAGTTCCCGTGTAATCGTTACACCCACTATATGACATCCTCCACTAGCATAGATCTTAATCTTGGTAGGAGGGAAATGGTCATCCTCGGCACCATGTATGCCGGGGAAATGAAGAAAGGCCTTTTCAGTCTCATGCATTATCTCATGCCTAAGCGACAAATCCTATCCCTACATTCTGGCTGCAATATGGGGAAAGATGGAGATGTTGCACTGTTCTTTGGATTGTCAGGTACTGGGAAGACAACTCTGTCTACTGATCACAATAGATACCTAATTGGAGATGATGAACACTGTTGGACTGAGAATGGTGTATCAAATATCGAAGGTGGTTGCTATGCCAAGTGTATTGATCTCTCGAGGGAGAAAGAACCTGACATTTGGAATGCCATCAAGTTTGGTGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACTCGAGAAGTGGATTATTCTGACAAATCTGTTACAGAGAATACTCGGGCAGCCTACCCCATTGAGTACATTCCCAATGCAAAAATACCGTGTGTTGGTCCTCATCCGAAGAATGTGATACTTTTGGCATGTGATGCATTTGGTGTGCTCCCACCTGTGAGCAAGTTAAACCTGGCACAGACCATGTACCATTTCATCAGTGGCTATACTGCACTGGTTGCTGGAACTGAAGAGGGCATTAAGGAGCCACAGGCAACATTCTCGGCTTGCTTTGGTGCTGCATTTATAATGTTGCATCCAACGAAGTATGCAGCAATGCTTGCTCAGAAAATGCAGCAGCATGGTGCAACTGGATGGCTGGTCAACACTGGCTGGTCTGGTGGAAGGTATGGATCGGGAAAGCGCATTAAGCTACCCTACACCCGGAAAATCATTGATGCCATACACTCTGGCAGCCTCTTGAATGCAAATTACAAGAAGACTGAAGTGTTTGGACTTGAGATCCCCAATGAGATTGAGGGAGTACCTTCACAAATACTGGATCCAGTGAACACTTGGTCGGACAAGAATGCATACCAGGAAACACTCCTGAAGTTGGCTGGTCTATTTAAGAACAACTTTGAGACTTTCACAAACTACAAGATTGGCAAGGACAACAAGCTGACTGAAGAAATTCTCGCAGCTGGTCCGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

524

Amino Acids

58.77

Weight (kDa)

6.0

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	8 - 469	1e-212	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1163
AasI	GACNNNNNNGTC	2 cut(s)	124, 691
AccB1I	GGYRCC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	6 cut(s)	299, 312, 1276, 1372, 1412, 1425
AcsI	RAATTY	4 cut(s)	259, 406, 1548, 1567
AcuI	CTGAAG	5 cut(s)	414, 1125, 1380, 1487, 1563
AfaI	GTAC	5 cut(s)	415, 676, 944, 1064, 1401
AfiI	CCNNNNNNNGG	3 cut(s)	971, 1299, 1471
AflIII	ACRYGT	2 cut(s)	142, 372
AgsI	TTSAA	3 cut(s)	206, 298, 1339
AjnI	CCWGG	3 cut(s)	341, 1047, 1452
AluBI	AGCT	7 cut(s)	37, 175, 245, 400, 1288, 1537, 1559
AluI	AGCT	7 cut(s)	37, 175, 245, 400, 1288, 1537, 1559
Alw21I	GWGCWC	2 cut(s)	219, 1026
Alw26I	GTCTC	5 cut(s)	132, 152, 340, 578, 1493
AlwI	GGATC	6 cut(s)	299, 312, 1276, 1372, 1412, 1425
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	3 cut(s)	799, 879, 921
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	8 cut(s)	624, 926, 1154, 1187, 1210, 1213, 1329, 1556
ApoI	RAATTY	4 cut(s)	259, 406, 1548, 1567
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	2 cut(s)	190, 1548
AspLEI	GCGC	2 cut(s)	92, 1281
AspS9I	GGNCC	2 cut(s)	974, 1562
AsuC2I	CCSGG	2 cut(s)	547, 1300
AsuHPI	GGTGA	1 cut(s)	186
AvaI	CYCGRG	3 cut(s)	799, 879, 921
AvaII	GGWCC	2 cut(s)	974, 1562
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BamHI	GGATCC	2 cut(s)	304, 1417
BanI	GGYRCC	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	689, 1361
Bbv12I	GWGCWC	2 cut(s)	219, 1026
BbvI	GCAGC	8 cut(s)	611, 938, 1141, 1199, 1222, 1225, 1341, 1568
BccI	CCATC	3 cut(s)	635, 839, 1224
BcgI	CGANNNNNNTGC	2 cut(s)	1119, 1153
BciT130I	CCWGG	3 cut(s)	343, 1049, 1454
BciVI	GTATCC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	2 cut(s)	547, 1300
BcoDI	GTCTC	5 cut(s)	132, 152, 340, 578, 1493
BfaI	CTAG	2 cut(s)	489, 1573
BfuI	GTATCC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	8 cut(s)	625, 927, 1155, 1188, 1211, 1214, 1330, 1557
BlsI	GCNGC	8 cut(s)	626, 928, 1156, 1189, 1212, 1215, 1331, 1558
Bme1390I	CCNGG	5 cut(s)	343, 547, 1049, 1300, 1454
Bme18I	GGWCC	2 cut(s)	974, 1562
BmeT110I	CYCGRG	3 cut(s)	799, 879, 921
BmgT120I	GGNCC	2 cut(s)	974, 1562
BmiI	GGNNCC	5 cut(s)	112, 306, 535, 1122, 1419
BmrFI	CCNGG	5 cut(s)	343, 547, 1049, 1300, 1454
BmrI	ACTGGG	3 cut(s)	310, 381, 687
BmsI	GCATC	3 cut(s)	1000, 1180, 1303
BmuI	ACTGGG	3 cut(s)	310, 381, 687
BpiI	GAAGAC	2 cut(s)	689, 1361
BpmI	CTGGAG	2 cut(s)	129, 422
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	1394
BpuMI	CCSGG	2 cut(s)	547, 1300
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	2 cut(s)	132, 152
BsaJI	CCNNGG	3 cut(s)	342, 529, 546
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	971, 1299, 1471
Bse1I	ACTGG	8 cut(s)	305, 387, 682, 1095, 1231, 1249, 1419, 1421
Bse3DI	GCAATG	1 cut(s)	1197
Bse8I	GATNNNNATC	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	3 cut(s)	343, 1049, 1454
BseDI	CCNNGG	3 cut(s)	342, 529, 546
BseGI	GGATG	6 cut(s)	160, 479, 525, 979, 1171, 1235
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	971, 1299, 1471
BseMI	GCAATG	1 cut(s)	1197
BseMII	CTCAG	2 cut(s)	735, 1214
BseNI	ACTGG	8 cut(s)	305, 387, 682, 1095, 1231, 1249, 1419, 1421
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	8 cut(s)	611, 938, 1141, 1199, 1222, 1225, 1341, 1568
BsgI	GTGCAG	2 cut(s)	51, 1071
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	219, 1026
BsiHKCI	CYCGRG	3 cut(s)	799, 879, 921
BsiSI	CCGG	3 cut(s)	419, 546, 1300
BslI	CCNNNNNNNGG	3 cut(s)	971, 1299, 1471
BsmAI	GTCTC	5 cut(s)	132, 152, 340, 578, 1493
BsmI	GAATGC	3 cut(s)	832, 1345, 1450
BsnI	GGCC	1 cut(s)	564
Bso31I	GGTCTC	2 cut(s)	132, 152
BsoBI	CYCGRG	3 cut(s)	799, 879, 921
Bsp1286I	GDGCHC	2 cut(s)	219, 1026
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	2 cut(s)	736, 1213
BspEI	TCCGGA	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	5 cut(s)	112, 306, 535, 1122, 1419
BspPI	GGATC	6 cut(s)	299, 312, 1276, 1372, 1412, 1425
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	132, 152
BsrDI	GCAATG	1 cut(s)	1197
BsrI	ACTGG	8 cut(s)	305, 387, 682, 1095, 1231, 1249, 1419, 1421
BssECI	CCNNGG	3 cut(s)	342, 529, 546
BssMI	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
Bst2UI	CCWGG	3 cut(s)	343, 1049, 1454
Bst4CI	ACNGT	3 cut(s)	657, 737, 966
Bst6I	CTCTTC	3 cut(s)	162, 390, 1101
BstAPI	GCANNNNNTGC	3 cut(s)	1010, 1094, 1196
BstC8I	GCNNGC	3 cut(s)	48, 1144, 1197
BstDEI	CTNAG	3 cut(s)	594, 744, 1200
BstF5I	GGATG	6 cut(s)	160, 479, 525, 979, 1171, 1235
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	92, 1281
BstKTI	GATC	7 cut(s)	307, 499, 703, 796, 1271, 1380, 1420
BstMAI	GTCTC	5 cut(s)	132, 152, 340, 578, 1493
BstMBI	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 1010, 1094, 1196, 1285
BstNI	CCWGG	3 cut(s)	343, 1049, 1454
BstNSI	RCATGY	2 cut(s)	376, 1008
BstSCI	CCNGG	5 cut(s)	341, 545, 1047, 1298, 1452
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	8 cut(s)	611, 938, 1141, 1199, 1222, 1225, 1341, 1568
BstV2I	GAAGAC	2 cut(s)	689, 1361
BstX2I	RGATCY	4 cut(s)	304, 496, 1377, 1417
BstYI	RGATCY	4 cut(s)	304, 496, 1377, 1417
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	564
BtsCI	GGATG	6 cut(s)	160, 479, 525, 979, 1171, 1235
BtsIMutI	CAGTG	6 cut(s)	653, 733, 1081, 1088, 1242, 1428
Cac8I	GCNNGC	3 cut(s)	48, 1144, 1197
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	92, 1281
Cfr13I	GGNCC	2 cut(s)	974, 1562
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	414, 675, 943, 1063, 1400
CviQI	GTAC	5 cut(s)	414, 675, 943, 1063, 1400
DdeI	CTNAG	3 cut(s)	594, 744, 1200
DpnI	GATC	7 cut(s)	306, 498, 702, 795, 1270, 1379, 1419
DpnII	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
DrdI	GACNNNNNNGTC	2 cut(s)	124, 691
DseDI	GACNNNNNNGTC	2 cut(s)	124, 691
Eam1104I	CTCTTC	3 cut(s)	162, 390, 1101
EarI	CTCTTC	3 cut(s)	162, 390, 1101
Eco147I	AGGCCT	1 cut(s)	564
Eco31I	GGTCTC	2 cut(s)	132, 152
Eco47I	GGWCC	2 cut(s)	974, 1562
Eco57I	CTGAAG	5 cut(s)	414, 1125, 1380, 1487, 1563
Eco88I	CYCGRG	3 cut(s)	799, 879, 921
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	341, 1047, 1452
EcoT22I	ATGCAT	3 cut(s)	582, 1015, 1450
FalI	AAGNNNNNCTT	4 cut(s)	159, 191, 1478, 1510
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	8 cut(s)	625, 927, 1155, 1188, 1211, 1214, 1330, 1557
FokI	GGATG	6 cut(s)	167, 466, 512, 966, 1158, 1242
Fsp4HI	GCNGC	8 cut(s)	625, 927, 1155, 1188, 1211, 1214, 1330, 1557
FspBI	CTAG	2 cut(s)	489, 1573
GlaI	GCGC	2 cut(s)	91, 1280
GluI	GCNGC	8 cut(s)	625, 927, 1155, 1188, 1211, 1214, 1330, 1557
GsuI	CTGGAG	2 cut(s)	129, 422
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	3 cut(s)	419, 546, 1300
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	92, 1281
Hin6I	GCGC	2 cut(s)	90, 1279
HinP1I	GCGC	2 cut(s)	90, 1279
HincII	GTYRAC	3 cut(s)	84, 232, 1240
HindII	GTYRAC	3 cut(s)	84, 232, 1240
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	3 cut(s)	419, 546, 1300
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	6 cut(s)	84, 194, 232, 696, 1240, 1426
Hpy188I	TCNGA	6 cut(s)	383, 898, 984, 1203, 1438, 1566
Hpy188III	TCNNGA	9 cut(s)	108, 308, 392, 419, 799, 881, 1272, 1336, 1465
Hpy8I	GTNNAC	6 cut(s)	84, 194, 232, 696, 1240, 1426
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	180, 761, 1254, 1413
HpyCH4III	ACNGT	3 cut(s)	657, 737, 966
HpyCH4IV	ACGT	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 1010, 1094, 1196, 1285
HpyF3I	CTNAG	3 cut(s)	594, 744, 1200
HpySE526I	ACGT	1 cut(s)	80
HspAI	GCGC	2 cut(s)	90, 1279
Kpn2I	TCCGGA	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	4 cut(s)	110, 172, 1029, 1120
Lsp1109I	GCAGC	8 cut(s)	611, 938, 1141, 1199, 1222, 1225, 1341, 1568
LweI	GCATC	3 cut(s)	1000, 1180, 1303
MaeI	CTAG	2 cut(s)	489, 1573
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	76, 461, 907
MalI	GATC	7 cut(s)	306, 498, 702, 795, 1270, 1379, 1419
MboI	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
MboII	GAAGA	8 cut(s)	179, 407, 568, 694, 997, 1118, 1366, 1556
MflI	RGATCY	4 cut(s)	304, 496, 1377, 1417
MhlI	GDGCHC	2 cut(s)	219, 1026
MluCI	AATT	6 cut(s)	259, 406, 717, 1345, 1548, 1567
MluI	ACGCGT	1 cut(s)	142
MmeI	TCCRAC	5 cut(s)	406, 719, 831, 1199, 1416
MnlI	CCTC	9 cut(s)	163, 493, 507, 539, 795, 987, 1102, 1343, 1387
Mph1103I	ATGCAT	3 cut(s)	582, 1015, 1450
MroI	TCCGGA	1 cut(s)	418
MroXI	GAANNNNTTC	2 cut(s)	190, 1548
MseI	TTAA	5 cut(s)	501, 1043, 1116, 1284, 1485
MslI	CAYNNNNRTG	3 cut(s)	10, 206, 224
MspA1I	CMGCKG	1 cut(s)	1559
MspI	CCGG	3 cut(s)	419, 546, 1300
MspR9I	CCNGG	5 cut(s)	343, 547, 1049, 1300, 1454
Mva1269I	GAATGC	3 cut(s)	832, 1345, 1450
MvaI	CCWGG	3 cut(s)	343, 1049, 1454
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	43, 1010, 1094, 1196, 1285
NciI	CCSGG	2 cut(s)	547, 1300
NdeII	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
NlaIV	GGNNCC	5 cut(s)	112, 306, 535, 1122, 1419
NmeAIII	GCCGAG	2 cut(s)	510, 1118
NsiI	ATGCAT	3 cut(s)	582, 1015, 1450
NspI	RCATGY	2 cut(s)	376, 1008
PaeR7I	CTCGAG	2 cut(s)	799, 879
PceI	AGGCCT	1 cut(s)	564
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	3 cut(s)	832, 1345, 1450
PdmI	GAANNNNTTC	2 cut(s)	190, 1548
PfeI	GAWTC	1 cut(s)	318
PflFI	GACNNNGTC	2 cut(s)	272, 387
PkrI	GCNGC	8 cut(s)	626, 928, 1156, 1189, 1212, 1215, 1331, 1558
PscI	ACATGT	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	1163
Psp6I	CCWGG	3 cut(s)	341, 1047, 1452
PspGI	CCWGG	3 cut(s)	341, 1047, 1452
PspN4I	GGNNCC	5 cut(s)	112, 306, 535, 1122, 1419
PspPI	GGNCC	2 cut(s)	974, 1562
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	4 cut(s)	304, 496, 1377, 1417
PsyI	GACNNNGTC	2 cut(s)	272, 387
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	5 cut(s)	415, 676, 944, 1064, 1401
RsaNI	GTAC	5 cut(s)	414, 675, 943, 1063, 1400
RseI	CAYNNNNRTG	3 cut(s)	10, 206, 224
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	5 cut(s)	501, 1043, 1116, 1284, 1485
SatI	GCNGC	8 cut(s)	625, 927, 1155, 1188, 1211, 1214, 1330, 1557
Sau3AI	GATC	7 cut(s)	304, 496, 700, 793, 1268, 1377, 1417
Sau96I	GGNCC	2 cut(s)	974, 1562
ScrFI	CCNGG	5 cut(s)	343, 547, 1049, 1300, 1454
SduI	GDGCHC	2 cut(s)	219, 1026
SfaNI	GCATC	3 cut(s)	1000, 1180, 1303
Sfr274I	CTCGAG	2 cut(s)	799, 879
SinI	GGWCC	2 cut(s)	974, 1562
SlaI	CTCGAG	2 cut(s)	799, 879
SmiMI	CAYNNNNRTG	3 cut(s)	10, 206, 224
SmlI	CTYRAG	3 cut(s)	799, 879, 1373
SmoI	CTYRAG	3 cut(s)	799, 879, 1373
Sse9I	AATT	6 cut(s)	259, 406, 717, 1345, 1548, 1567
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	489, 1573
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	5 cut(s)	341, 545, 1047, 1298, 1452
TaaI	ACNGT	3 cut(s)	657, 737, 966
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	765, 800, 880
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	6 cut(s)	259, 406, 717, 1345, 1548, 1567
TatI	WGTACW	1 cut(s)	942
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	5 cut(s)	501, 1043, 1116, 1284, 1485
Tru9I	TTAA	5 cut(s)	501, 1043, 1116, 1284, 1485
TscAI	CASTG	6 cut(s)	660, 740, 1081, 1095, 1249, 1428
TseI	GCWGC	8 cut(s)	624, 926, 1154, 1187, 1210, 1213, 1329, 1556
TspDTI	ATGAA	6 cut(s)	75, 214, 352, 569, 744, 1060
TspRI	CASTG	6 cut(s)	660, 740, 1081, 1095, 1249, 1428
Tth111I	GACNNNGTC	2 cut(s)	272, 387
VpaK11BI	GGWCC	2 cut(s)	974, 1562
XapI	RAATTY	4 cut(s)	259, 406, 1548, 1567
XceI	RCATGY	2 cut(s)	376, 1008
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1073, 1428
XhoI	CTCGAG	2 cut(s)	799, 879
XmiI	GTMKAC	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	190, 1548
XspI	CTAG	2 cut(s)	489, 1573
Zsp2I	ATGCAT	3 cut(s)	582, 1015, 1450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.