Rorug02G0162200

Phosphoenolpyruvate carboxykinase ATP

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
14487426 .. 14489146
1721 bp
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UTR
Exon/CDS
Intron
Rorug02G0162200.1

Sequence Viewer

Length: 1044 bp
ATGAGAGAAACAGATCAAGAGCCTTCTCCTTTTGCCGCCAAATCTCCAAGATTCTTCAAGATCGTTCTTGACAGTGCACTTCGAGATGGAAAGATTGAAATTCCAAAGGCATTTGTGATGAAGCATGGAAATTGTTTGGCAGAGTCAGTATTGCTTAAGGTTCCTAGCAGAGCAGAATGGCGAATAGGATTGACAAGGTGTGATGGTGAGGTTTGGTTAGAAAAGGGCTGGCCAGAATTCGCAAAGTTTTACTCCCTAGACCATGGATACTTATTAGTGTTGAGTTGTGAAGGTGATTATGCCAGTTTCCAAGTGCAAATTTTTAGTAGGAATACTATGGAGATAGATTATCCCATGAATTCAAGCCTTGGCGAGGGGGAAGAACTTGATGATGATGATGATGTTTCTGTTGAAATATTGGATGTGGTTCCCTCAAAGAAAAGAGGGAGAAGAGAATTGGCAGGCCTTTGGCCTCATAAGAGGATGAGGACAAAATCAGGTGATGAAGCTGAAGTGAATTCCTACCACAGAGGTAAAACTAAACATCAAGGAGTGGAGCATCAAAGAGAAAAGAGAAGTTATGGTACTCCTAGTTCCTTAAAGAATTGTCAAGCGGAGGGGGGAAGCATGCCTACTGCATCAACATCTTTAGAGGCTAATGAGCATGATGTTGATACAAGAGATGGAGCGTTTCTGAGAGCTACAAGTTTCAAGTACAGTAATCCATATCTTGTAGTCAGAATGCAAAAATCATACCTATCAAGATATTTGAAATTACAAGGAGCCTTTGCAAAAGAATGTGTTTGTGCTAGAGGTGTTCGTACTGTTAACCTACAGAATTCGGCTGGGAGAATTTGGCCTGCTACGTTCACTGTCGAGGTATGGAGTGAGGGAAAGCAACGACAAGGAAGAGTATCTTGGAAATCATTTGTGCATGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGAAAAAGGGATGCGAAGTTCCAATGTTTAAAGTTCACATATTCCGAGCTGAAGATGCAGATGCCTGA

Protein Analysis

347

Amino Acids

39.34

Weight (kDa)

8.04

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 111 1.4e-11 B3 DNA binding domain
B3 PF02362 254 - 342 8.5e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 614
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 7 cut(s) 99, 236, 318, 358, 517, 838, 852
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 586, 716, 823
AfiI CCNNNNNNNGG 1 cut(s) 373
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 58, 98, 363, 413, 712, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 901, 933
AloI GAACNNNNNNTCC 2 cut(s) 978, 1010
AluBI AGCT 4 cut(s) 509, 701, 976, 1025
AluI AGCT 4 cut(s) 509, 701, 976, 1025
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AoxI GGCC 4 cut(s) 230, 463, 470, 857
ApaLI GTGCAC 1 cut(s) 75
ApoI RAATTY 7 cut(s) 99, 236, 318, 358, 517, 838, 852
AsuHPI GGTGA 3 cut(s) 218, 305, 512
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 232
BarI GAAGNNNNNNTAC 4 cut(s) 568, 600, 616, 648
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 3 cut(s) 80, 197, 677
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 4 cut(s) 165, 257, 591, 810
BfmI CTRYAG 1 cut(s) 833
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmiI GGNNCC 3 cut(s) 162, 429, 784
BmsI GCATC 6 cut(s) 568, 647, 949, 977, 1021, 1027
BsaJI CCNNGG 2 cut(s) 262, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 262, 367
BseGI GGATG 4 cut(s) 427, 489, 964, 992
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 845
BshFI GGCC 4 cut(s) 232, 465, 472, 859
BsiHKAI GWGCWC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 373
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 4 cut(s) 232, 465, 472, 859
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 13, 60
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 2 cut(s) 36, 614
BspANI GGCC 4 cut(s) 232, 465, 472, 859
BspCNI CTCAG 1 cut(s) 687
BspLI GGNNCC 3 cut(s) 162, 429, 784
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 262, 367
BssMI GATC 2 cut(s) 13, 60
BssT1I CCWWGG 2 cut(s) 262, 367
Bst4CI ACNGT 4 cut(s) 74, 719, 826, 874
Bst6I CTCTTC 2 cut(s) 445, 904
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 230, 463, 629, 861
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 262
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 4 cut(s) 427, 489, 964, 992
BstKTI GATC 2 cut(s) 16, 63
BstMBI GATC 2 cut(s) 13, 60
BstMWI GCNNNNNNNGC 1 cut(s) 1031
BstNSI RCATGY 1 cut(s) 631
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 4 cut(s) 232, 465, 472, 859
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 4 cut(s) 427, 489, 964, 992
BtsIMutI CAGTG 2 cut(s) 79, 870
Cac8I GCNNGC 4 cut(s) 230, 463, 629, 861
Csp6I GTAC 3 cut(s) 585, 715, 822
CviAII CATG 6 cut(s) 125, 263, 355, 628, 665, 935
CviQI GTAC 3 cut(s) 585, 715, 822
DdeI CTNAG 1 cut(s) 695
DpnI GATC 2 cut(s) 15, 62
DpnII GATC 2 cut(s) 13, 60
DraI TTTAAA 1 cut(s) 1006
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 445, 904
EarI CTCTTC 2 cut(s) 445, 904
Eco130I CCWWGG 2 cut(s) 262, 367
Eco147I AGGCCT 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRI GAATTC 4 cut(s) 236, 358, 517, 838
EcoT14I CCWWGG 2 cut(s) 262, 367
ErhI CCWWGG 2 cut(s) 262, 367
FaeI CATG 6 cut(s) 128, 266, 358, 631, 668, 938
FalI AAGNNNNNCTT 2 cut(s) 901, 933
FatI CATG 6 cut(s) 124, 262, 354, 627, 664, 934
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 434, 496, 971, 999
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 4 cut(s) 165, 257, 591, 810
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 849
HaeIII GGCC 4 cut(s) 232, 465, 472, 859
Hin1II CATG 6 cut(s) 128, 266, 358, 631, 668, 938
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 2 cut(s) 51, 143
HpaI GTTAAC 1 cut(s) 829
HphI GGTGA 3 cut(s) 218, 305, 512
Hpy166II GTNNAC 4 cut(s) 77, 829, 870, 1012
Hpy188I TCNGA 3 cut(s) 696, 740, 1022
Hpy188III TCNNGA 5 cut(s) 17, 58, 68, 83, 762
Hpy8I GTNNAC 4 cut(s) 77, 829, 870, 1012
HpyAV CCTTC 2 cut(s) 33, 284
HpyCH4III ACNGT 4 cut(s) 74, 719, 826, 874
HpyCH4IV ACGT 1 cut(s) 866
HpyCH4V TGCA 7 cut(s) 77, 316, 638, 745, 791, 934, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 1031
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 866
Hsp92II CATG 6 cut(s) 128, 266, 358, 631, 668, 938
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 2 cut(s) 13, 60
LmnI GCTCC 3 cut(s) 556, 686, 782
LpnPI CCDG 8 cut(s) 214, 246, 316, 447, 483, 831, 873, 976
LweI GCATC 6 cut(s) 568, 647, 949, 977, 1021, 1027
MaeI CTAG 4 cut(s) 165, 257, 591, 810
MaeII ACGT 1 cut(s) 866
MalI GATC 2 cut(s) 15, 62
MboI GATC 2 cut(s) 13, 60
MboII GAAGA 5 cut(s) 46, 392, 462, 921, 1040
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 1 cut(s) 152
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 4 cut(s) 156, 599, 828, 1005
Msp20I TGGCCA 1 cut(s) 232
MspCI CTTAAG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 1 cut(s) 1031
NcoI CCATGG 1 cut(s) 262
NdeII GATC 2 cut(s) 13, 60
NlaIII CATG 6 cut(s) 128, 266, 358, 631, 668, 938
NlaIV GGNNCC 3 cut(s) 162, 429, 784
NspI RCATGY 1 cut(s) 631
PaeI GCATGC 1 cut(s) 631
PceI AGGCCT 1 cut(s) 465
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 845
PspN4I GGNNCC 3 cut(s) 162, 429, 784
PsrI GAACNNNNNNTAC 2 cut(s) 577, 609
RsaI GTAC 3 cut(s) 586, 716, 823
RsaNI GTAC 3 cut(s) 585, 715, 822
SaqAI TTAA 4 cut(s) 156, 599, 828, 1005
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 13, 60
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 6 cut(s) 568, 647, 949, 977, 1021, 1027
SfcI CTRYAG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SphI GCATGC 1 cut(s) 631
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 2 cut(s) 36, 614
SspI AATATT 1 cut(s) 417
SspMI CTAG 4 cut(s) 165, 257, 591, 810
StuI AGGCCT 1 cut(s) 465
StyI CCWWGG 2 cut(s) 262, 367
TaaI ACNGT 4 cut(s) 74, 719, 826, 874
TaiI ACGT 1 cut(s) 869
TaqI TCGA 2 cut(s) 82, 876
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 4 cut(s) 156, 599, 828, 1005
Tru9I TTAA 4 cut(s) 156, 599, 828, 1005
TscAI CASTG 2 cut(s) 79, 877
TspDTI ATGAA 3 cut(s) 134, 371, 519
TspRI CASTG 2 cut(s) 79, 877
Vha464I CTTAAG 1 cut(s) 155
VneI GTGCAC 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 7 cut(s) 99, 236, 318, 358, 517, 838, 852
XceI RCATGY 1 cut(s) 631
XspI CTAG 4 cut(s) 165, 257, 591, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.