Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

56608057 .. 56609304

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTCCACTGAGCAAAAGCTTTGGTGGGGAAAGTAGGTGCATCCGACTTACTCCTGAAGAGCTGGAGAATTTCGATACTCCAGACTTCACTATATACAATGCCGGTCAGTTCCCGTGTAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCATGTACGCCGGGAAAATGAAGAAAGGTCTTTTCAGTTTAATGCATTATCTCATGCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

87

Amino Acids

9.84

Weight (kDa)

7.78

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	14 - 87	1.1e-20	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	206
AluBI	AGCT	2 cut(s)	21, 64
AluI	AGCT	2 cut(s)	21, 64
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	2 cut(s)	153, 174
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	51
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	2 cut(s)	66, 86
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	42, 143, 189
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	105, 210
BspLI	GGNNCC	1 cut(s)	199
BspOI	GCTAGC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	42, 143, 189
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	42, 143, 189
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	139, 202, 253
CviJI	RGCY	2 cut(s)	21, 64
CviKI_1	RGCY	2 cut(s)	21, 64
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	11
DinI	GGCGCC	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	142, 205, 256
FaiI	YATR	5 cut(s)	95, 97, 140, 203, 254
FatI	CATG	3 cut(s)	138, 201, 252
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	3 cut(s)	29, 130, 176
FspBI	CTAG	2 cut(s)	153, 174
GlaI	GCGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	66, 86
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	2 cut(s)	105, 210
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	142, 205, 256
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	105, 210
Hpy166II	GTNNAC	2 cut(s)	8, 160
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	56, 83
Hpy8I	GTNNAC	2 cut(s)	8, 160
HpyCH4V	TGCA	2 cut(s)	42, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	142, 205, 256
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	50, 69, 96, 118, 223
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	153, 174
MaeIII	GTNAC	1 cut(s)	125
MboII	GAAGA	2 cut(s)	71, 232
MluCI	AATT	1 cut(s)	70
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	239
MspI	CCGG	2 cut(s)	105, 210
MspR9I	CCNGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	142, 205, 256
NlaIV	GGNNCC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	239
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	5 cut(s)	23, 41, 66, 171, 229
SfaNI	GCATC	1 cut(s)	51
SfoI	GGCGCC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	70
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	153, 174
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	153, 174
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.