Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

58100574 .. 58102066

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCCAAAGATGTGTATCAGTTTAATGTAACAAAATTCACCTATGTGTGTGGCAGGTGCATCCGACTTACTCCTGAAGAGCTGGAGAATTTCGGTACTCCAGACTTCACTATATACAATGCCGGTCAGTTCCCGTGTAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCATGTACGCCGGGAAAATGAAGAAAGAGAATTCTCGAGCAGCGTATCCCATTGAGTACATTCCCAACGCAAAGATACCATGTGTTGTCCCTCATCCAAAGAATGTGATACTTTTGGCATGTGATGCATTTGGTGTACTCCCAAGTCCCACCTGTCAGCAAGTTAAACCTGGCGCTGAAGAGGGTGTGAAGGAGCCAGAGGCAACATTCTCGGCTTGGTCTGGTGCAGCACTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTCGAAGGTATGCAAATTCAAATAACATCATAAAAAACGTCATAGGACTGATCAATTTCCAAAACGGCATTGTTTGGGTTCAGGGTATAGCAGTTAGGTTCTATATGATACAGATAATGGTAAATGATGTAGTTCGAGATATAACCAGAAGATCAACACCAAAAAGAGCAGCAGATGATATAAGCCTCTATCTTTGTTCCCGGCAGCTATGGATCAGGAAGCCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

9.27

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	20 - 81	5.1e-13	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	82 - 190	3.9e-32	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	767
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	4 cut(s)	35, 88, 247, 559
AcuI	CTGAAG	2 cut(s)	96, 414
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	97, 224, 275, 354
AgsI	TTSAA	1 cut(s)	564
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	82, 751
AluI	AGCT	2 cut(s)	82, 751
AlwI	GGATC	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	252
ApeKI	GCWGC	5 cut(s)	257, 443, 476, 713, 748
ApoI	RAATTY	4 cut(s)	35, 88, 247, 559
AspLEI	GCGC	2 cut(s)	218, 392
AsuC2I	CCSGG	2 cut(s)	229, 745
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	5 cut(s)	269, 455, 488, 725, 760
BceAI	ACGGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	2 cut(s)	229, 745
BfaI	CTAG	2 cut(s)	171, 192
BfoI	RGCGCY	2 cut(s)	219, 393
BfuAI	ACCTGC	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	6 cut(s)	258, 444, 477, 714, 749, 767
BlsI	GCNGC	6 cut(s)	259, 445, 478, 715, 750, 768
Bme1390I	CCNGG	3 cut(s)	229, 387, 745
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	217, 411
BmrFI	CCNGG	3 cut(s)	229, 387, 745
BmsI	GCATC	4 cut(s)	69, 331, 469, 486
BmtI	GCTAGC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	84, 104
BpuMI	CCSGG	2 cut(s)	229, 745
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	5 cut(s)	60, 161, 207, 310, 460
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	269, 455, 488, 725, 760
BsgI	GTGCAG	1 cut(s)	462
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	123, 228, 745
BslFI	GGGAC	2 cut(s)	290, 348
BsmFI	GGGAC	2 cut(s)	290, 348
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	594, 695, 756
BspACI	CCGC	1 cut(s)	767
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	217, 411
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	764
BspQI	GCTCTTC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	594, 695, 756
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	387
Bst6I	CTCTTC	2 cut(s)	72, 390
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	193, 486
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	5 cut(s)	60, 161, 207, 310, 460
BstH2I	RGCGCY	2 cut(s)	219, 393
BstHHI	GCGC	2 cut(s)	218, 392
BstKTI	GATC	3 cut(s)	597, 698, 759
BstMBI	GATC	3 cut(s)	594, 695, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 341, 485
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	227, 385, 743
BstV1I	GCAGC	5 cut(s)	269, 455, 488, 725, 760
BsuI	GTATCC	1 cut(s)	273
BtsCI	GGATG	5 cut(s)	60, 161, 207, 310, 460
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	193, 486
CfoI	GCGC	2 cut(s)	218, 392
Cfr10I	RCCGGY	1 cut(s)	122
Csp6I	GTAC	4 cut(s)	96, 223, 274, 353
CviAII	CATG	6 cut(s)	157, 220, 297, 336, 506, 519
CviJI	RGCY	8 cut(s)	82, 412, 431, 488, 523, 729, 751, 766
CviKI_1	RGCY	8 cut(s)	82, 412, 431, 488, 523, 729, 751, 766
CviQI	GTAC	4 cut(s)	96, 223, 274, 353
DdeI	CTNAG	1 cut(s)	489
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	3 cut(s)	596, 697, 758
DpnII	GATC	3 cut(s)	594, 695, 756
Eam1104I	CTCTTC	2 cut(s)	72, 390
EarI	CTCTTC	2 cut(s)	72, 390
Eco130I	CCWWGG	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	96, 414
Eco88I	CYCGRG	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	346
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	6 cut(s)	160, 223, 300, 339, 509, 522
FaqI	GGGAC	2 cut(s)	290, 348
FatI	CATG	6 cut(s)	156, 219, 296, 335, 505, 518
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	258, 444, 477, 714, 749, 767
FokI	GGATG	5 cut(s)	47, 148, 194, 297, 447
Fsp4HI	GCNGC	6 cut(s)	258, 444, 477, 714, 749, 767
FspBI	CTAG	2 cut(s)	171, 192
GlaI	GCGC	2 cut(s)	217, 391
GluI	GCNGC	6 cut(s)	258, 444, 477, 714, 749, 767
GsuI	CTGGAG	2 cut(s)	84, 104
HaeII	RGCGCY	2 cut(s)	219, 393
HapII	CCGG	3 cut(s)	123, 228, 745
HhaI	GCGC	2 cut(s)	218, 392
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	160, 223, 300, 339, 509, 522
Hin6I	GCGC	2 cut(s)	216, 390
HinP1I	GCGC	2 cut(s)	216, 390
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HpaII	CCGG	3 cut(s)	123, 228, 745
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	178, 353, 529
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	5 cut(s)	74, 101, 252, 680, 760
Hpy8I	GTNNAC	3 cut(s)	178, 353, 529
HpyAV	CCTTC	2 cut(s)	400, 543
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	9 cut(s)	60, 344, 443, 460, 476, 499, 512, 518, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 341, 485
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	160, 223, 300, 339, 509, 522
HspAI	GCGC	2 cut(s)	216, 390
KasI	GGCGCC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	594, 695, 756
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	5 cut(s)	269, 455, 488, 725, 760
LweI	GCATC	4 cut(s)	69, 331, 469, 486
MaeI	CTAG	2 cut(s)	171, 192
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	28, 143
MalI	GATC	3 cut(s)	596, 697, 758
MboI	GATC	3 cut(s)	594, 695, 756
MboII	GAAGA	5 cut(s)	89, 250, 407, 505, 705
MluCI	AATT	5 cut(s)	35, 88, 247, 559, 598
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	175, 318, 391, 409, 740
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	4 cut(s)	24, 381, 452, 772
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	3 cut(s)	123, 228, 745
MspR9I	CCNGG	3 cut(s)	229, 387, 745
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	224, 341, 485
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	2 cut(s)	229, 745
NdeII	GATC	3 cut(s)	594, 695, 756
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	160, 223, 300, 339, 509, 522
NlaIV	GGNNCC	2 cut(s)	217, 411
NmeAIII	GCCGAG	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	72
PkrI	GCNGC	6 cut(s)	259, 445, 478, 715, 750, 768
PluTI	GGCGCC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	217, 411
RsaI	GTAC	4 cut(s)	97, 224, 275, 354
RsaNI	GTAC	4 cut(s)	96, 223, 274, 353
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	24, 381, 452, 772
SatI	GCNGC	6 cut(s)	258, 444, 477, 714, 749, 767
Sau3AI	GATC	3 cut(s)	594, 695, 756
ScrFI	CCNGG	3 cut(s)	229, 387, 745
SfaNI	GCATC	4 cut(s)	69, 331, 469, 486
SfoI	GGCGCC	1 cut(s)	217
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	35, 88, 247, 559, 598
SsiI	CCGC	1 cut(s)	767
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	171, 192
StyD4I	CCNGG	3 cut(s)	227, 385, 743
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	253, 547, 679
TasI	AATT	5 cut(s)	35, 88, 247, 559, 598
TatI	WGTACW	2 cut(s)	273, 352
TauI	GCSGC	1 cut(s)	769
Tru1I	TTAA	4 cut(s)	24, 381, 452, 772
Tru9I	TTAA	4 cut(s)	24, 381, 452, 772
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	5 cut(s)	257, 443, 476, 713, 748
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	538
XapI	RAATTY	4 cut(s)	35, 88, 247, 559
XceI	RCATGY	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	171, 192
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.