Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

58394145 .. 58395075

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGAACACTGTTGGAATGAGAATGGTGTATAAAATATCGAAGGTGGTTGATATGCCAAGTGCATTGATCTCTCCAGGGAGAAAGAGCGCGACATCTGGAATGCCATCAAGTTTGGCTCTGCAAGTTAAACCTGGCGTTGAAGAAGGTGTGAAGGAGCCACGGGCAACATTCTCGGCTTGCTCTGGTGCAGCATTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTGGAAGATATGCAAATTCAAATAACATCATAAAAAACGTCATAGGACTGATCAATTTCCAAAACGGCATTGTTTGGGTTCAGGGTATAGCAGATAGGTTATATATGATAGAGATAATGGTAAATGATGTAGTTCGAGATATAACCAAAAGATCATCACCAAAAAGTGCAGCAGATGATATAAGCCTCTATCTTTGTTCCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

165

Amino Acids

17.94

Weight (kDa)

9.69

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	40 - 106	6.9e-25	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	143, 312
AjnI	CCWGG	2 cut(s)	76, 133
ApeKI	GCWGC	3 cut(s)	191, 224, 461
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	203, 236, 473
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	78, 135
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	493
BisI	GCNGC	3 cut(s)	192, 225, 462
BlsI	GCNGC	3 cut(s)	193, 226, 463
Bme1390I	CCNGG	3 cut(s)	78, 135, 493
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	78, 135, 493
BmsI	GCATC	2 cut(s)	217, 234
BpmI	CTGGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	493
BsaJI	CCNNGG	2 cut(s)	77, 161
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	78, 135
BseDI	CCNNGG	2 cut(s)	77, 161
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	203, 236, 473
BsgI	GTGCAG	2 cut(s)	210, 480
Bsh1236I	CGCG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	69, 342, 443
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	77, 161
BssMI	GATC	3 cut(s)	69, 342, 443
Bst2UI	CCWGG	2 cut(s)	78, 135
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	181, 234
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	72, 345, 446
BstMBI	GATC	3 cut(s)	69, 342, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	78, 135
BstSCI	CCNGG	3 cut(s)	76, 133, 491
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	203, 236, 473
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	9, 279
Cac8I	GCNNGC	2 cut(s)	181, 234
CfoI	GCGC	1 cut(s)	92
CviAII	CATG	2 cut(s)	254, 267
CviJI	RGCY	6 cut(s)	119, 160, 179, 236, 271, 477
CviKI_1	RGCY	6 cut(s)	119, 160, 179, 236, 271, 477
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	71, 344, 445
DpnII	GATC	3 cut(s)	69, 342, 443
EcoRII	CCWGG	2 cut(s)	76, 133
FaeI	CATG	2 cut(s)	257, 270
FatI	CATG	2 cut(s)	253, 266
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	192, 225, 462
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	192, 225, 462
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	192, 225, 462
GsuI	CTGGAG	1 cut(s)	60
HapII	CCGG	1 cut(s)	493
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	257, 270
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	99, 428
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	37, 140, 148
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	257, 270
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	69, 342, 443
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	3 cut(s)	203, 236, 473
LweI	GCATC	2 cut(s)	217, 234
MaeII	ACGT	1 cut(s)	330
MalI	GATC	3 cut(s)	71, 344, 445
MboI	GATC	3 cut(s)	69, 342, 443
MboII	GAAGA	3 cut(s)	155, 253, 309
MluCI	AATT	2 cut(s)	307, 346
MnlI	CCTC	1 cut(s)	488
MseI	TTAA	2 cut(s)	129, 200
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	3 cut(s)	78, 135, 493
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	2 cut(s)	78, 135
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	69, 342, 443
NlaIII	CATG	2 cut(s)	257, 270
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	193, 226, 463
Psp6I	CCWGG	2 cut(s)	76, 133
PspGI	CCWGG	2 cut(s)	76, 133
PspN4I	GGNNCC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	129, 200
SatI	GCNGC	3 cut(s)	192, 225, 462
Sau3AI	GATC	3 cut(s)	69, 342, 443
ScrFI	CCNGG	3 cut(s)	78, 135, 493
SetI	ASST	5 cut(s)	48, 136, 151, 333, 392
SfaNI	GCATC	2 cut(s)	217, 234
Sse9I	AATT	2 cut(s)	307, 346
StyD4I	CCNGG	3 cut(s)	76, 133, 491
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	41, 427
TasI	AATT	2 cut(s)	307, 346
Tru1I	TTAA	2 cut(s)	129, 200
Tru9I	TTAA	2 cut(s)	129, 200
TscAI	CASTG	2 cut(s)	16, 286
TseI	GCWGC	3 cut(s)	191, 224, 461
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	16, 286
XapI	RAATTY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.