Rh2DG220100

Phosphoenolpyruvate carboxykinase ATP

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
21137386 .. 21139873
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG220100.1

Sequence Viewer

Length: 1104 bp
ATGAGTCCACTGAGCAAGAGCTTTGGTGGGGAAAGTAGGTGCATCCGCCCTACTCCTGAAGAGCTGGAGAATTTCAGTACTCCAGACTTCACTATATACAATGCTGGTCAGTTCCGATGCAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGACTTCAACCTTGCTAGAAAGGAAATGATCATCCTTGGTGCCATATACGCCGGGGAAATGAAGAAAGGTCTTTTCAGTTTAATGCACTATCTCATGCCCAAACAACACATCCTCTCCCTACATTCTGGCTGCAATATGGGGAAAGATGGAGATGTTGCCCTCTTCTTCGGATTGTCAGGCACCAGAAAGACAACTCTATCTACGGATCACAATAGGTACTTAATTGGAGATGATGAACACTGTTGGAGTGAGAATGGTGTATCAAATACCGAAGTGCTGGAAAATGTCACATTCGACGAGCATACACGAGAGGTGGATTATAGTGACAAATCTATCACAAGTAAATATCAGCTGTTTGAGTTTCAATGCAAAAGTTACAGGTGGATTGATCCTCATCTGCAGCTTCTGATACACCAGACAAGTAAACTGAGCTGTGTTTGTTCTGGTTGTAGAGAATTCTCGAGCAGCGTATCCCTATTCAGTACATTCCCAACGCAAAAGATACCATGTGTTGGCCCTCATCCAAAGAATGTGATACTTTTGCCATGTGATGCATTTGGTGTATTCCCACCTCGTCAGCAAGTTAAACCTGGCACATGGTACATGCTTTCATCAGTGGTTGCTGGAACTGAAGAGGGTGTGAAGGAGCCACGGGCAACATTCTCGGCTTGCTTTGGTGCAGAATTTTTGATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAACATGGTGCAACTGCATGGCTGGCCAAACTGGTTGGTCTGGAGGAATGGTCAAACAAGAATGCATATGAGGAAACTCTACTGAAGCTGGCTAGCCTATTCACGACCAACTTTGAGACTTTCACAGACTGCAAGATTGGCAACGACAATAACCTGACGGAAGACCTCCTTGCAGCTGGTCCTATTTTTCAGAACTTCAAAACTTGA

Protein Analysis

367

Amino Acids

41.3

Weight (kDa)

6.19

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPCK_ATP PF01293 14 - 144 3.8e-54 Phosphoenolpyruvate carboxykinase
PEPCK_ATP PF01293 215 - 307 4.1e-27 Phosphoenolpyruvate carboxykinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 197, 338
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 46
AclWI GGATC 2 cut(s) 372, 542
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 3 cut(s) 70, 614, 842
AcuI CTGAAG 3 cut(s) 78, 810, 1001
AfaI GTAC 4 cut(s) 79, 377, 643, 761
AfiI CCNNNNNNNGG 1 cut(s) 671
AgsI TTSAA 3 cut(s) 166, 524, 1096
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 7 cut(s) 21, 64, 511, 562, 591, 985, 1073
AluI AGCT 7 cut(s) 21, 64, 511, 562, 591, 985, 1073
Alw26I GTCTC 1 cut(s) 1007
AlwI GGATC 2 cut(s) 372, 542
AlwNI CAGNNNCTG 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 619
AoxI GGCC 2 cut(s) 673, 921
ApeKI GCWGC 5 cut(s) 288, 559, 624, 872, 1070
ApoI RAATTY 3 cut(s) 70, 614, 842
AspS9I GGNCC 2 cut(s) 674, 1076
AsuC2I CCSGG 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 619
AvaII GGWCC 1 cut(s) 1076
BalI TGGCCA 1 cut(s) 923
BanI GGYRCC 2 cut(s) 197, 338
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 1065
BbvI GCAGC 5 cut(s) 275, 571, 636, 884, 1082
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 1007
BfaI CTAG 3 cut(s) 153, 174, 990
BfmI CTRYAG 1 cut(s) 557
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 5 cut(s) 289, 560, 625, 873, 1071
BlsI GCNGC 5 cut(s) 290, 561, 626, 874, 1072
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 211, 750
Bme18I GGWCC 1 cut(s) 1076
BmeT110I CYCGRG 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 674, 1076
BmiI GGNNCC 3 cut(s) 199, 340, 807
BmrFI CCNGG 2 cut(s) 211, 750
BmsI GCATC 5 cut(s) 51, 107, 700, 865, 882
BmtI GCTAGC 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 1065
BpmI CTGGAG 3 cut(s) 66, 86, 959
BpuMI CCSGG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 193, 210, 809
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 193, 210, 809
BseGI GGATG 6 cut(s) 42, 143, 189, 267, 679, 856
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 2 cut(s) 578, 876
BseNI ACTGG 1 cut(s) 933
BseXI GCAGC 5 cut(s) 275, 571, 636, 884, 1082
BsgI GTGCAG 1 cut(s) 858
BshFI GGCC 2 cut(s) 675, 923
BshNI GGYRCC 2 cut(s) 197, 338
BsiHKCI CYCGRG 1 cut(s) 619
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 1 cut(s) 1007
BsmI GAATGC 1 cut(s) 964
BsnI GGCC 2 cut(s) 675, 923
BsoBI CYCGRG 1 cut(s) 619
Bsp143I GATC 3 cut(s) 186, 364, 547
BspACI CCGC 1 cut(s) 46
BspANI GGCC 2 cut(s) 675, 923
BspCNI CTCAG 2 cut(s) 579, 877
BspLI GGNNCC 3 cut(s) 199, 340, 807
BspMAI CTGCAG 1 cut(s) 561
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 2 cut(s) 372, 542
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 197, 338
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 1 cut(s) 933
BssECI CCNNGG 3 cut(s) 193, 210, 809
BssMI GATC 3 cut(s) 186, 364, 547
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 3 cut(s) 54, 326, 786
BstC8I GCNNGC 5 cut(s) 829, 882, 921, 987, 991
BstDEI CTNAG 3 cut(s) 11, 587, 885
BstDSI CCRYGG 1 cut(s) 809
BstF5I GGATG 6 cut(s) 42, 143, 189, 267, 679, 856
BstKTI GATC 3 cut(s) 189, 367, 550
BstMAI GTCTC 1 cut(s) 1007
BstMBI GATC 3 cut(s) 186, 364, 547
BstMWI GCNNNNNNNGC 4 cut(s) 206, 881, 920, 1035
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 2 cut(s) 209, 748
BstSFI CTRYAG 1 cut(s) 557
BstV1I GCAGC 5 cut(s) 275, 571, 636, 884, 1082
BstV2I GAAGAC 1 cut(s) 1065
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 675, 923
BtgI CCRYGG 1 cut(s) 809
BtsCI GGATG 6 cut(s) 42, 143, 189, 267, 679, 856
BtsIMutI CAGTG 3 cut(s) 8, 397, 780
Cac8I GCNNGC 5 cut(s) 829, 882, 921, 987, 991
CaiI CAGNNNCTG 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 674, 1076
Csp6I GTAC 4 cut(s) 78, 376, 642, 760
CviAII CATG 8 cut(s) 139, 253, 666, 705, 756, 763, 902, 915
CviQI GTAC 4 cut(s) 78, 376, 642, 760
DdeI CTNAG 3 cut(s) 11, 587, 885
DpnI GATC 3 cut(s) 188, 366, 549
DpnII GATC 3 cut(s) 186, 364, 547
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 3 cut(s) 54, 326, 786
EarI CTCTTC 3 cut(s) 54, 326, 786
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 1076
Eco57I CTGAAG 3 cut(s) 78, 810, 1001
Eco88I CYCGRG 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 2 cut(s) 715, 964
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 8 cut(s) 142, 256, 669, 708, 759, 766, 905, 918
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FatI CATG 8 cut(s) 138, 252, 665, 704, 755, 762, 901, 914
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 289, 560, 625, 873, 1071
FokI GGATG 6 cut(s) 29, 130, 176, 254, 666, 843
Fsp4HI GCNGC 5 cut(s) 289, 560, 625, 873, 1071
FspBI CTAG 3 cut(s) 153, 174, 990
GluI GCNGC 5 cut(s) 289, 560, 625, 873, 1071
GsuI CTGGAG 3 cut(s) 66, 86, 959
HaeIII GGCC 2 cut(s) 675, 923
HapII CCGG 1 cut(s) 210
Hin1II CATG 8 cut(s) 142, 256, 669, 708, 759, 766, 905, 918
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 8, 160, 584
Hpy188I TCNGA 4 cut(s) 116, 329, 567, 1089
Hpy188III TCNNGA 5 cut(s) 56, 83, 619, 938, 1000
Hpy8I GTNNAC 3 cut(s) 8, 160, 584
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 796
HpyCH4III ACNGT 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 881, 920, 1035
HpyF3I CTNAG 3 cut(s) 11, 587, 885
Hsp92II CATG 8 cut(s) 142, 256, 669, 708, 759, 766, 905, 918
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 3 cut(s) 186, 364, 547
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 5 cut(s) 275, 571, 636, 884, 1082
LweI GCATC 5 cut(s) 51, 107, 700, 865, 882
MaeI CTAG 3 cut(s) 153, 174, 990
MaeIII GTNAC 4 cut(s) 125, 445, 482, 533
MalI GATC 3 cut(s) 188, 366, 549
MboI GATC 3 cut(s) 186, 364, 547
MboII GAAGA 7 cut(s) 71, 232, 313, 316, 803, 901, 1070
MlsI TGGCCA 1 cut(s) 923
MluCI AATT 4 cut(s) 70, 381, 614, 842
MluNI TGGCCA 1 cut(s) 923
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 383
Mox20I TGGCCA 1 cut(s) 923
Mph1103I ATGCAT 2 cut(s) 715, 964
MscI TGGCCA 1 cut(s) 923
MseI TTAA 3 cut(s) 239, 380, 744
Msp20I TGGCCA 1 cut(s) 923
MspA1I CMGCKG 2 cut(s) 511, 1073
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 211, 750
Mva1269I GAATGC 1 cut(s) 964
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 206, 881, 920, 1035
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 964
NdeII GATC 3 cut(s) 186, 364, 547
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 8 cut(s) 142, 256, 669, 708, 759, 766, 905, 918
NlaIV GGNNCC 3 cut(s) 199, 340, 807
NmeAIII GCCGAG 1 cut(s) 803
NmuCI GTSAC 2 cut(s) 445, 482
NsiI ATGCAT 2 cut(s) 715, 964
NspI RCATGY 1 cut(s) 766
PaeR7I CTCGAG 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 964
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 5 cut(s) 290, 561, 626, 874, 1072
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 199, 340, 807
PspPI GGNCC 2 cut(s) 674, 1076
PstI CTGCAG 1 cut(s) 561
PstNI CAGNNNCTG 1 cut(s) 565
PvuII CAGCTG 2 cut(s) 511, 1073
RsaI GTAC 4 cut(s) 79, 377, 643, 761
RsaNI GTAC 4 cut(s) 78, 376, 642, 760
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 239, 380, 744
SatI GCNGC 5 cut(s) 289, 560, 625, 873, 1071
Sau3AI GATC 3 cut(s) 186, 364, 547
Sau96I GGNCC 2 cut(s) 674, 1076
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 211, 750
SfaNI GCATC 5 cut(s) 51, 107, 700, 865, 882
SfcI CTRYAG 1 cut(s) 557
Sfr274I CTCGAG 1 cut(s) 619
SinI GGWCC 1 cut(s) 1076
SlaI CTCGAG 1 cut(s) 619
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 4 cut(s) 70, 381, 614, 842
SsiI CCGC 1 cut(s) 46
SspMI CTAG 3 cut(s) 153, 174, 990
StyD4I CCNGG 2 cut(s) 209, 748
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 453, 620
TasI AATT 4 cut(s) 70, 381, 614, 842
TatI WGTACW 2 cut(s) 77, 641
Tru1I TTAA 3 cut(s) 239, 380, 744
Tru9I TTAA 3 cut(s) 239, 380, 744
TscAI CASTG 3 cut(s) 15, 404, 780
TseFI GTSAC 2 cut(s) 445, 482
TseI GCWGC 5 cut(s) 288, 559, 624, 872, 1070
Tsp45I GTSAC 2 cut(s) 445, 482
TspDTI ATGAA 3 cut(s) 233, 408, 759
TspGWI ACGGA 2 cut(s) 377, 1070
TspRI CASTG 3 cut(s) 15, 404, 780
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 1076
XapI RAATTY 3 cut(s) 70, 614, 842
XceI RCATGY 1 cut(s) 766
XhoI CTCGAG 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 153, 174, 990
ZrmI AGTACT 1 cut(s) 79
Zsp2I ATGCAT 2 cut(s) 715, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.