Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

9477475 .. 9479482

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGTCCACTGAGCAAAAGCTTTGGTAGGGAAAGTAGGTGCCCATTTTCACTTTTTGACTGCTATGTTACTTCAATATATGATTTCATACTTGATCAATTTTGGTATAGAATCGATGCACTCTTCTTTGGAGATTTGGCACTGGCAGCTGCAATGTTGGTAGAAAATGTCACATTCGACGAGCATACCCGAGAGGTGGATTACAGTGACAAATCTATTACAGAGAATTCTCGAGCAGCGTATCCCATTGAGTACATTCCCAATGCAAAGATACCATTTGTTGGCCCTCATCCAAAGAATGTGATACTTTTGGCATGTGATGCATTTGTTGTACTCCCACCTGAGCCACGGGCAACATTCTCGGCTTGCTCTGGTGCAGCATTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTGGAAGCTATGGATCAGGAAGCCGCATTAAGCTAGCCTACACTCGAAAAATTACCGATGCCATACACTATACAGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

6.5

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	50 - 114	2.9e-22	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	115 - 182	1.3e-28	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	2 cut(s)	254, 333
AfiI	CCNNNNNNNGG	2 cut(s)	196, 281
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	4 cut(s)	21, 149, 486, 511
AluI	AGCT	4 cut(s)	21, 149, 486, 511
AlwI	GGATC	1 cut(s)	499
Ama87I	CYCGRG	2 cut(s)	189, 231
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	5 cut(s)	146, 149, 236, 377, 410
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	284
AsuNHI	GCTAGC	1 cut(s)	511
AvaI	CYCGRG	2 cut(s)	189, 231
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	136, 158, 248, 389, 422
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	94
BfaI	CTAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	6 cut(s)	147, 150, 237, 378, 411, 502
BlsI	GCNGC	6 cut(s)	148, 151, 238, 379, 412, 503
BmeT110I	CYCGRG	2 cut(s)	189, 231
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	5 cut(s)	106, 310, 403, 420, 526
BmtI	GCTAGC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 281
Bse1I	ACTGG	2 cut(s)	147, 472
Bse3DI	GCAATG	2 cut(s)	159, 420
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	289, 394
BseLI	CCNNNNNNNGG	2 cut(s)	196, 281
BseMI	GCAATG	2 cut(s)	159, 420
BseMII	CTCAG	2 cut(s)	333, 414
BseNI	ACTGG	2 cut(s)	147, 472
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	5 cut(s)	136, 158, 248, 389, 422
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	114
BsiHKCI	CYCGRG	2 cut(s)	189, 231
BslI	CCNNNNNNNGG	2 cut(s)	196, 281
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	2 cut(s)	189, 231
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	94, 491
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	334, 415
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	41
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	159, 420
BsrI	ACTGG	2 cut(s)	147, 472
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	94, 491
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	367, 420, 513
BstDEI	CTNAG	3 cut(s)	11, 342, 423
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	289, 394
BstKTI	GATC	2 cut(s)	97, 494
BstMBI	GATC	2 cut(s)	94, 491
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 320, 419
BstNSI	RCATGY	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	5 cut(s)	136, 158, 248, 389, 422
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	289, 394
BtsIMutI	CAGTG	4 cut(s)	8, 140, 211, 465
Cac8I	GCNNGC	3 cut(s)	367, 420, 513
Cfr13I	GGNCC	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	253, 332
CviAII	CATG	3 cut(s)	315, 440, 453
CviQI	GTAC	2 cut(s)	253, 332
DdeI	CTNAG	3 cut(s)	11, 342, 423
DpnI	GATC	2 cut(s)	96, 493
DpnII	GATC	2 cut(s)	94, 491
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco88I	CYCGRG	2 cut(s)	189, 231
EcoRI	GAATTC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	3 cut(s)	318, 443, 456
FatI	CATG	3 cut(s)	314, 439, 452
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	147, 150, 237, 378, 411, 502
FokI	GGATG	2 cut(s)	276, 381
Fsp4HI	GCNGC	6 cut(s)	147, 150, 237, 378, 411, 502
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	6 cut(s)	147, 150, 237, 378, 411, 502
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	318, 443, 456
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	4, 111
Hpy166II	GTNNAC	2 cut(s)	8, 463
Hpy188III	TCNNGA	2 cut(s)	231, 495
Hpy8I	GTNNAC	2 cut(s)	8, 463
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 320, 419
HpyF3I	CTNAG	3 cut(s)	11, 342, 423
Hsp92II	CATG	3 cut(s)	318, 443, 456
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 491
LpnPI	CCDG	8 cut(s)	128, 354, 357, 404, 443, 453, 462, 480
Lsp1109I	GCAGC	5 cut(s)	136, 158, 248, 389, 422
LweI	GCATC	5 cut(s)	106, 310, 403, 420, 526
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	3 cut(s)	67, 169, 206
MalI	GATC	2 cut(s)	96, 493
MboI	GATC	2 cut(s)	94, 491
MboII	GAAGA	2 cut(s)	115, 439
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	98, 226, 528
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	187, 297
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	2 cut(s)	386, 507
MspA1I	CMGCKG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	146, 320, 419
NdeII	GATC	2 cut(s)	94, 491
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	3 cut(s)	318, 443, 456
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	169, 206
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	318
PaeR7I	CTCGAG	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	6 cut(s)	148, 151, 238, 379, 412, 503
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	254, 333
RsaNI	GTAC	2 cut(s)	253, 332
SaqAI	TTAA	2 cut(s)	386, 507
SatI	GCNGC	6 cut(s)	147, 150, 237, 378, 411, 502
Sau3AI	GATC	2 cut(s)	94, 491
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	23, 41, 151, 198, 343, 488, 513
SfaNI	GCATC	5 cut(s)	106, 310, 403, 420, 526
Sfr274I	CTCGAG	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	98, 226, 528
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	4 cut(s)	114, 177, 232, 523
TasI	AATT	3 cut(s)	98, 226, 528
TatI	WGTACW	2 cut(s)	252, 331
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	386, 507
Tru9I	TTAA	2 cut(s)	386, 507
TscAI	CASTG	4 cut(s)	15, 147, 211, 472
TseFI	GTSAC	2 cut(s)	169, 206
TseI	GCWGC	5 cut(s)	146, 149, 236, 377, 410
Tsp45I	GTSAC	2 cut(s)	169, 206
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	4 cut(s)	15, 147, 211, 472
Van91I	CCANNNNNTGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.