Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

8056150 .. 8056922

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTACCACTTCATCAGTGGCTACACTGCTCTGGTTGCTGGAACTGAAGATGGTATCAAGGAGCCAACAGCAACATTCTCAGCATGCTTCGGTGCAGCATTTATAATGTTGCATCCTACTAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCACGGTGCAACAGGATGGCTGGTTAACACTGGCTGGTCCGGTGGAAGGAAAATCATTGACGCCATCCACTCCGGCAGCCTCTTAAACGCGAAGTACAAGAAGACTGAAGTGTTTGGACTAGAAATCCCCACTGAGGTCGAGGGAGTGCCTTCAGAAATACTCGATCCAGTGAACACTTGGTCGGACAAGAATGCATACAATGAAACTCTGATGAAGCTGGCTGGCCTCTTCAAGAGGAACTTTGAGACTTTCACAAACTATAAGATTGGGAAGGACAACAAGCTGACCGAGGAGATACTTGCGGCCGGACCAAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

159

Amino Acids

17.37

Weight (kDa)

6.42

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	3 cut(s)	66, 282, 291
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	5, 251
AfiI	CCNNNNNNNGG	2 cut(s)	201, 289
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	2 cut(s)	373, 439
AluI	AGCT	2 cut(s)	373, 439
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	2 cut(s)	379, 459
ApeKI	GCWGC	3 cut(s)	95, 128, 231
ApoI	RAATTY	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	192, 464
AvaII	GGWCC	2 cut(s)	192, 464
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	107, 140, 243
BccI	CCATC	3 cut(s)	44, 165, 227
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	4 cut(s)	96, 129, 232, 459
BlsI	GCNGC	4 cut(s)	97, 130, 233, 460
Bme18I	GGWCC	2 cut(s)	192, 464
BmgT120I	GGNCC	2 cut(s)	192, 464
BmiI	GGNNCC	1 cut(s)	63
BmsI	GCATC	2 cut(s)	121, 138
BpiI	GAAGAC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 289
Bse1I	ACTGG	2 cut(s)	190, 323
Bse3DI	GCAATG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	3 cut(s)	112, 176, 219
BseLI	CCNNNNNNNGG	2 cut(s)	201, 289
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	3 cut(s)	93, 132, 279
BseNI	ACTGG	2 cut(s)	190, 323
BseRI	GAGGAG	1 cut(s)	461
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	107, 140, 243
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	381, 461
BsiEI	CGRYCG	1 cut(s)	462
BsiSI	CCGG	3 cut(s)	195, 228, 462
BslI	CCNNNNNNNGG	2 cut(s)	201, 289
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	381, 461
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	2 cut(s)	381, 461
BspCNI	CTCAG	3 cut(s)	92, 133, 280
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	190, 323
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	85, 138, 375, 379
BstDEI	CTNAG	4 cut(s)	79, 120, 141, 288
BstF5I	GGATG	3 cut(s)	112, 176, 219
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	319
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 137
BstNSI	RCATGY	1 cut(s)	87
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	107, 140, 243
BstV2I	GAAGAC	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	381, 461
BtsCI	GGATG	3 cut(s)	112, 176, 219
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	5 cut(s)	22, 24, 183, 285, 330
Cac8I	GCNNGC	4 cut(s)	85, 138, 375, 379
Cfr13I	GGNCC	2 cut(s)	192, 464
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	4, 250
CviAII	CATG	1 cut(s)	84
CviQI	GTAC	2 cut(s)	4, 250
DdeI	CTNAG	4 cut(s)	79, 120, 141, 288
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EclXI	CGGCCG	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	192, 464
Eco52I	CGGCCG	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	66, 282, 291
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 104, 126, 352, 417
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	96, 129, 232, 459
FokI	GGATG	3 cut(s)	99, 183, 206
Fsp4HI	GCNGC	4 cut(s)	96, 129, 232, 459
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	4 cut(s)	96, 129, 232, 459
HaeIII	GGCC	2 cut(s)	381, 461
HapII	CCGG	3 cut(s)	195, 228, 462
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	195, 228, 462
Hpy166II	GTNNAC	2 cut(s)	181, 328
Hpy188I	TCNGA	3 cut(s)	310, 340, 366
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	2 cut(s)	181, 328
HpyAV	CCTTC	3 cut(s)	195, 315, 421
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	6 cut(s)	95, 112, 128, 151, 164, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 137
HpyF3I	CTNAG	4 cut(s)	79, 120, 141, 288
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	3 cut(s)	107, 140, 243
LweI	GCATC	2 cut(s)	121, 138
MaeI	CTAG	1 cut(s)	275
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	4 cut(s)	59, 157, 268, 376
MluCI	AATT	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	245, 283, 289, 384, 392, 439
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	2 cut(s)	180, 239
MspI	CCGG	3 cut(s)	195, 228, 462
Mva1269I	GAATGC	1 cut(s)	352
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	35, 137
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	87
PaeI	GCATGC	1 cut(s)	87
PctI	GAATGC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	97, 130, 233, 460
PsiI	TTATAA	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	192, 464
RsaI	GTAC	2 cut(s)	5, 251
RsaNI	GTAC	2 cut(s)	4, 250
SaqAI	TTAA	2 cut(s)	180, 239
SatI	GCNGC	4 cut(s)	96, 129, 232, 459
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	192, 464
SetI	ASST	3 cut(s)	294, 375, 441
SfaNI	GCATC	2 cut(s)	121, 138
SinI	GGWCC	2 cut(s)	192, 464
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	1 cut(s)	469
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	294, 318
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	1 cut(s)	469
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	180, 239
Tru9I	TTAA	2 cut(s)	180, 239
TscAI	CASTG	5 cut(s)	22, 31, 190, 292, 330
TseI	GCWGC	3 cut(s)	95, 128, 231
TspDTI	ATGAA	2 cut(s)	372, 383
TspRI	CASTG	5 cut(s)	22, 31, 190, 292, 330
VpaK11BI	GGWCC	2 cut(s)	192, 464
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 330
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.