Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

21790068 .. 21798145

Gene Structure 8078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTCCACTGAGCAAGAGCTTTGGTGGGGAAAGTAGGTGCCCATTTTCACTTTTTGACTGCTATGTTACTTCAATATATGATTTCATACTTGATCAATATATTTTGGTACTCACTTGTAGTGGTTCATCTAAATTGAAATGGATGAGCAAACTTTCATGGTCAACAGAGAAGGAGCTGTGGATTACTATAATTCTTTGGACAAGGTGCATCCGCCCTACTCCTGAAGAGCTGGAGAATTTCAGTACTCCAGACTTCACCATATACAATGGTGGTCAGTTCCGATGTAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGAAATCAACCTTGCTAGAAAGGAAATGATCATCCTTGGTGCCATATACGCCGGGGAAATGAAGAAAGGTCTTTTCAGTTTAATGCACTATCTCATGCCCAAACAACACATCCTCTCCCTACATTCTGGCTGCAATATGGGGAAAGATGGAGATGTTGCCCTCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

165

Amino Acids

18.95

Weight (kDa)

7.6

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	35 - 165	8.2e-33	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	39, 365
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	111, 247
AgsI	TTSAA	2 cut(s)	75, 139
AluBI	AGCT	3 cut(s)	21, 178, 232
AluI	AGCT	3 cut(s)	21, 178, 232
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	39, 365
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	1 cut(s)	467
BclI	TGATCA	2 cut(s)	94, 354
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	2 cut(s)	321, 342
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	41, 367
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	234, 254
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	361, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
BseDI	CCNNGG	2 cut(s)	361, 378
BseGI	GGATG	5 cut(s)	150, 210, 311, 357, 435
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	443
BshNI	GGYRCC	2 cut(s)	39, 365
BsiSI	CCGG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	94, 354
BspACI	CCGC	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	41, 367
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	39, 365
BssECI	CCNNGG	2 cut(s)	361, 378
BssMI	GATC	2 cut(s)	94, 354
BssT1I	CCWWGG	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	222, 494
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	5 cut(s)	150, 210, 311, 357, 435
BstKTI	GATC	2 cut(s)	97, 357
BstMBI	GATC	2 cut(s)	94, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	443
BtsCI	GGATG	5 cut(s)	150, 210, 311, 357, 435
BtsIMutI	CAGTG	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	110, 246
CviAII	CATG	3 cut(s)	159, 307, 421
CviJI	RGCY	4 cut(s)	21, 178, 232, 456
CviKI_1	RGCY	4 cut(s)	21, 178, 232, 456
CviQI	GTAC	2 cut(s)	110, 246
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	96, 356
DpnII	GATC	2 cut(s)	94, 354
Eam1104I	CTCTTC	2 cut(s)	222, 494
EarI	CTCTTC	2 cut(s)	222, 494
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	162, 310, 424
FatI	CATG	3 cut(s)	158, 306, 420
FbaI	TGATCA	2 cut(s)	94, 354
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	5 cut(s)	157, 197, 298, 344, 422
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	2 cut(s)	321, 342
GluI	GCNGC	1 cut(s)	457
GsuI	CTGGAG	2 cut(s)	234, 254
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	3 cut(s)	162, 310, 424
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	8, 165
Hpy188I	TCNGA	2 cut(s)	284, 497
Hpy188III	TCNNGA	2 cut(s)	224, 251
Hpy8I	GTNNAC	2 cut(s)	8, 165
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	210, 412, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	162, 310, 424
Ksp22I	TGATCA	2 cut(s)	94, 354
Kzo9I	GATC	2 cut(s)	94, 354
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	218, 237, 264, 391, 438
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	2 cut(s)	321, 342
MaeIII	GTNAC	2 cut(s)	67, 293
MalI	GATC	2 cut(s)	96, 356
MboI	GATC	2 cut(s)	94, 354
MboII	GAAGA	4 cut(s)	239, 400, 481, 484
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	134, 192, 238
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	325, 449, 497
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	94, 354
NlaIII	CATG	3 cut(s)	162, 310, 424
NlaIV	GGNNCC	2 cut(s)	41, 367
PciSI	GCTCTTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	41, 367
RsaI	GTAC	2 cut(s)	111, 247
RsaNI	GTAC	2 cut(s)	110, 246
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	2 cut(s)	94, 354
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	23, 41, 180, 209, 234, 339, 397
SfaNI	GCATC	1 cut(s)	219
Sse9I	AATT	3 cut(s)	134, 192, 238
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	321, 342
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	361
TasI	AATT	3 cut(s)	134, 192, 238
TatI	WGTACW	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	76, 117, 147, 401
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	238
XspI	CTAG	2 cut(s)	321, 342
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.