Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006889.1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

70271 .. 79020

Gene Structure 8750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006889.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

atgggagacttcaccggagccagatcaccggctgccgaaatccggtcaactttcaccggattccgagaaaagctttgggcacccaatcaccaatctcctctgctattgcttgggtcgagcaccgggggcgtccaggaagccataggcaatgccaaggagacgacgaggcgccaggaggccatcgaagacgttgtatggtcgtcgttatcagtgccggccgagcttgggctagctgcaacagaatatgggcaaacgtctaatggacgcaggcaaagacgatctcgagggaggaagagcaagattcgatgtggcgcttgtcccctacgccgccttcctcctcgacctcggcggaactccggtcgtcgcaatcctaacccgcctctgctgtggattgagatggcgtctaacggtgacggagatttcagcttcgcgactgggaacggcaacggagctgcgaggaatgggctggcgaagatccatacgacaccgaagaacgggaatggggtgtgccacgacgacaggttggcgactgtgaaggctcagaccattgaccagcttcattcactgcagaagaagaagtcggcaccgacgacacccatcaagggcactcaaggagactttgctgtagctctctctgaggaggaacgccagatgcagcagctccagtccatcagtaactctctggcgtcgctaacgagagggactggaccaaaggttgtgagaggagaccctgctcagcagtctcctcatcataccccaaaggtgtcatcgcaccaccatcatttcactcccaccatcagcgtcagtgacagtgccctcaagttcacccatgtcctgtacaacctctctcctgctgagctatatgagcaggcgataaataatgaaaagggctcgttcgttacgtcaacaggcgcattagcaacactttctggagccaagacgggtcggtctccaagggataaacgcgtcgtcaaggatgagaccacagaagaggagctttggtggggaaggggttcaccaaacattgaaatggacgagcacactttcatggtctttgtaaatgaccaatacttgaactgggatccagaaaacagaatcaaagtgcggattgtctctgccagggcttatcattctttgttcatgcacaacatgtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatttacaatgctggtcagttcccgtgcaatcgttacacccactacatgacatcctccactagcatagatcttaatcttggtaggagggaaatggtcatcctcggcaccatgtatgctggggaaatgaagaaaggtcttttcagtctcatgcattatctcatgcctaagcgacaaatcctatccctacattctggctgcaatatggggaaagatggagatgttgcactgttctttggattgtcaggtactgggaagacaactctgtctactgatcacaatagatacctaattggagatgatgaacactgttggactgagaattgtgtatcaaatatcgaaggtggttgctatgccaagtgtattgatctctcgagggagaaagagcctgacatctggaatgccatcaagtttggtgctgtgttggaaaatgttgtgtttgatgagcatactcgagaagtggattattctgacaaatctgttacagagaatactcgggcagcctaccccattgagtacattcccaatgcaaaaataccgtgtgttggtcctcatccgaagaatgtgatacttttggcatgtgatgcatttggtgtgctcccacctgtgagcaagttaaacctggcacagaccatgtaccatttcatcagtggctatactgcactggttgctggaactgaagagggcattaaggagccacaggcaacattctcggcttgctttggtgctgcatttataatgttgcatccaacgaagtatgcagcaatgcttgctcagaaaatgcagcagcatggtgcaactggatggctggtcaacactggctggtctggcggaaggtatggatcgggaaagcgcattaagctaccctacacccggaaaatcattgatgccatacactctggcagcctcttgaatgcaaattacaagaagactgaagtgtttggacttgagatccccgctgaggttgagggagtgccttcagaaatactggatccagtgaacacttggtcagacaagaatgcataccaggaaacactcctgaagttggctggtctatttaagaacaactttgagacttttacaaactacaagattggcaaggacaacaagctgactgaagaaattctcgctgctggtccgaatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

783

Amino Acids

86.51

Weight (kDa)

8.58

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1940
AasI	GACNNNNNNGTC	2 cut(s)	946, 1468
AccB1I	GGYRCC	4 cut(s)	79, 168, 583, 1310
AccI	GTMKAC	1 cut(s)	1472
AccII	CGCG	2 cut(s)	431, 966
AccIII	TCCGGA	1 cut(s)	1195
AciI	CCGC	6 cut(s)	328, 349, 377, 1105, 2034, 2160
AclWI	GGATC	7 cut(s)	469, 1076, 1089, 2053, 2149, 2189, 2202
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	1183, 2325, 2344
AcuI	CTGAAG	6 cut(s)	1191, 1902, 2157, 2166, 2264, 2340
AcyI	GRCGYC	4 cut(s)	129, 169, 401, 686
AfaI	GTAC	5 cut(s)	839, 1192, 1453, 1721, 1841
AfiI	CCNNNNNNNGG	8 cut(s)	42, 225, 494, 602, 1748, 2076, 2164, 2248
AflIII	ACRYGT	2 cut(s)	964, 1149
AgsI	TTSAA	3 cut(s)	1028, 1075, 2116
AjnI	CCWGG	5 cut(s)	132, 171, 1118, 1824, 2229
Alw21I	GWGCWC	3 cut(s)	122, 1041, 1803
Alw26I	GTCTC	9 cut(s)	152, 609, 720, 747, 954, 974, 1117, 1355, 2270
AlwI	GGATC	7 cut(s)	469, 1076, 1089, 2053, 2149, 2189, 2202
AlwNI	CAGNNNCTG	1 cut(s)	1454
Ama87I	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
Aor13HI	TCCGGA	1 cut(s)	1195
AoxI	GGCC	2 cut(s)	177, 216
ApoI	RAATTY	3 cut(s)	1183, 2325, 2344
Asp700I	GAANNNNTTC	2 cut(s)	1012, 2325
AspLEI	GCGC	4 cut(s)	171, 314, 914, 2058
AspS9I	GGNCC	3 cut(s)	707, 1751, 2339
AsuC2I	CCSGG	2 cut(s)	124, 2077
AsuHPI	GGTGA	7 cut(s)	4, 18, 46, 80, 422, 817, 1008
AsuNHI	GCTAGC	1 cut(s)	229
AvaI	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
AvaII	GGWCC	3 cut(s)	707, 1751, 2339
BaeGI	GKGCMC	3 cut(s)	82, 608, 817
BaeI	ACNNNNGTAYC	2 cut(s)	1138, 1171
BamHI	GGATCC	2 cut(s)	1081, 2194
BanI	GGYRCC	4 cut(s)	79, 168, 583, 1310
BanII	GRGCYC	1 cut(s)	893
BbsI	GAAGAC	3 cut(s)	192, 1466, 2138
Bbv12I	GWGCWC	3 cut(s)	122, 1041, 1803
BbvCI	CCTCAGC	1 cut(s)	2163
BccI	CCATC	9 cut(s)	188, 391, 605, 677, 786, 803, 1412, 1616, 2001
BceAI	ACGGC	1 cut(s)	457
BcgI	CGANNNNNNTGC	2 cut(s)	1896, 1930
BciT130I	CCWGG	5 cut(s)	134, 173, 1120, 1826, 2231
BciVI	GTATCC	1 cut(s)	1166
BclI	TGATCA	1 cut(s)	1477
BcnI	CCSGG	2 cut(s)	124, 2077
BcoDI	GTCTC	9 cut(s)	152, 609, 720, 747, 954, 974, 1117, 1355, 2270
BfaI	CTAG	3 cut(s)	230, 1266, 2350
BfmI	CTRYAG	2 cut(s)	566, 624
BfoI	RGCGCY	2 cut(s)	172, 315
BfuI	GTATCC	1 cut(s)	1166
BglII	AGATCT	1 cut(s)	1273
BlpI	GCTNAGC	2 cut(s)	735, 855
Bme1390I	CCNGG	7 cut(s)	124, 134, 173, 1120, 1826, 2077, 2231
Bme18I	GGWCC	3 cut(s)	707, 1751, 2339
BmeT110I	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
BmgT120I	GGNCC	3 cut(s)	707, 1751, 2339
BmiI	GGNNCC	9 cut(s)	19, 81, 170, 585, 934, 1083, 1312, 1899, 2196
BmrFI	CCNGG	7 cut(s)	124, 134, 173, 1120, 1826, 2077, 2231
BmrI	ACTGGG	4 cut(s)	444, 1087, 1158, 1464
BmsI	GCATC	4 cut(s)	642, 1777, 1957, 2080
BmtI	GCTAGC	1 cut(s)	233
BmuI	ACTGGG	4 cut(s)	444, 1087, 1158, 1464
BpiI	GAAGAC	3 cut(s)	192, 1466, 2138
BpmI	CTGGAG	3 cut(s)	647, 951, 1199
Bpu10I	CCTNAGC	2 cut(s)	1371, 2163
Bpu1102I	GCTNAGC	2 cut(s)	735, 855
BpuEI	CTTGAG	3 cut(s)	594, 803, 2171
BpuMI	CCSGG	2 cut(s)	124, 2077
BsaBI	GATNNNNATC	1 cut(s)	1278
BsaHI	GRCGYC	4 cut(s)	129, 169, 401, 686
BsaI	GGTCTC	3 cut(s)	720, 954, 974
BsaJI	CCNNGG	6 cut(s)	123, 153, 344, 953, 1119, 1306
BsaWI	WCCGGW	5 cut(s)	14, 42, 56, 356, 1195
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	8 cut(s)	42, 225, 494, 602, 1748, 2076, 2164, 2248
Bse118I	RCCGGY	2 cut(s)	28, 214
Bse3DI	GCAATG	2 cut(s)	154, 1974
Bse8I	GATNNNNATC	1 cut(s)	1278
BseAI	TCCGGA	1 cut(s)	1195
BseBI	CCWGG	5 cut(s)	134, 173, 1120, 1826, 2231
BseDI	CCNNGG	6 cut(s)	123, 153, 344, 953, 1119, 1306
BseGI	GGATG	6 cut(s)	982, 1256, 1302, 1756, 1948, 2012
BseJI	GATNNNNATC	1 cut(s)	1278
BseLI	CCNNNNNNNGG	8 cut(s)	42, 225, 494, 602, 1748, 2076, 2164, 2248
BseMI	GCAATG	2 cut(s)	154, 1974
BseMII	CTCAG	7 cut(s)	554, 627, 749, 846, 1512, 1991, 2154
BseRI	GAGGAG	6 cut(s)	87, 327, 653, 735, 738, 1007
BseSI	GKGCMC	3 cut(s)	82, 608, 817
BseX3I	CGGCCG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	1322
BsgI	GTGCAG	1 cut(s)	1848
Bsh1236I	CGCG	2 cut(s)	431, 966
Bsh1285I	CGRYCG	2 cut(s)	219, 361
BshFI	GGCC	2 cut(s)	179, 218
BshNI	GGYRCC	4 cut(s)	79, 168, 583, 1310
BsiEI	CGRYCG	2 cut(s)	219, 361
BsiHKAI	GWGCWC	3 cut(s)	122, 1041, 1803
BsiHKCI	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
BsiSI	CCGG	9 cut(s)	15, 29, 43, 57, 123, 215, 357, 1196, 2077
BslFI	GGGAC	2 cut(s)	303, 715
BslI	CCNNNNNNNGG	8 cut(s)	42, 225, 494, 602, 1748, 2076, 2164, 2248
BsmAI	GTCTC	9 cut(s)	152, 609, 720, 747, 954, 974, 1117, 1355, 2270
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	303, 715
BsmI	GAATGC	3 cut(s)	1609, 2122, 2227
BsnI	GGCC	2 cut(s)	179, 218
Bso31I	GGTCTC	3 cut(s)	720, 954, 974
BsoBI	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
Bsp1286I	GDGCHC	7 cut(s)	82, 122, 608, 817, 893, 1041, 1803
Bsp13I	TCCGGA	1 cut(s)	1195
Bsp1407I	TGTACA	1 cut(s)	837
Bsp1720I	GCTNAGC	2 cut(s)	735, 855
Bsp68I	TCGCGA	1 cut(s)	431
BspACI	CCGC	6 cut(s)	328, 349, 377, 1105, 2034, 2160
BspANI	GGCC	2 cut(s)	179, 218
BspCNI	CTCAG	7 cut(s)	553, 628, 748, 847, 1513, 1990, 2155
BspEI	TCCGGA	1 cut(s)	1195
BspFNI	CGCG	2 cut(s)	431, 966
BspLI	GGNNCC	9 cut(s)	19, 81, 170, 585, 934, 1083, 1312, 1899, 2196
BspMAI	CTGCAG	1 cut(s)	570
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	7 cut(s)	469, 1076, 1089, 2053, 2149, 2189, 2202
BspQI	GCTCTTC	2 cut(s)	287, 1167
BspT107I	GGYRCC	4 cut(s)	79, 168, 583, 1310
BspTNI	GGTCTC	3 cut(s)	720, 954, 974
BsrDI	GCAATG	2 cut(s)	154, 1974
BsrFI	RCCGGY	2 cut(s)	28, 214
BsrGI	TGTACA	1 cut(s)	837
BssAI	RCCGGY	2 cut(s)	28, 214
BssECI	CCNNGG	6 cut(s)	123, 153, 344, 953, 1119, 1306
BssNI	GRCGYC	4 cut(s)	129, 169, 401, 686
BssT1I	CCWWGG	2 cut(s)	153, 953
Bst2UI	CCWGG	5 cut(s)	134, 173, 1120, 1826, 2231
Bst4CI	ACNGT	6 cut(s)	410, 532, 812, 1434, 1514, 1743
Bst6I	CTCTTC	4 cut(s)	287, 984, 1167, 1878
BstACI	GRCGYC	4 cut(s)	129, 169, 401, 686
BstAPI	GCANNNNNTGC	3 cut(s)	1787, 1871, 1973
BstAUI	TGTACA	1 cut(s)	837
BstC8I	GCNNGC	7 cut(s)	216, 231, 269, 468, 870, 1921, 1974
BstDEI	CTNAG	8 cut(s)	540, 636, 735, 855, 1371, 1521, 1977, 2163
BstF5I	GGATG	6 cut(s)	982, 1256, 1302, 1756, 1948, 2012
BstFNI	CGCG	2 cut(s)	431, 966
BstH2I	RGCGCY	2 cut(s)	172, 315
BstHHI	GCGC	4 cut(s)	171, 314, 914, 2058
BstMAI	GTCTC	9 cut(s)	152, 609, 720, 747, 954, 974, 1117, 1355, 2270
BstMCI	CGRYCG	2 cut(s)	219, 361
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 220, 865, 1787, 1871, 1973, 2031, 2062
BstNI	CCWGG	5 cut(s)	134, 173, 1120, 1826, 2231
BstNSI	RCATGY	2 cut(s)	1153, 1785
BstSCI	CCNGG	7 cut(s)	122, 132, 171, 1118, 1824, 2075, 2229
BstSFI	CTRYAG	2 cut(s)	566, 624
BstSLI	GKGCMC	3 cut(s)	82, 608, 817
BstUI	CGCG	2 cut(s)	431, 966
BstV2I	GAAGAC	3 cut(s)	192, 1466, 2138
BstX2I	RGATCY	5 cut(s)	474, 1081, 1273, 2154, 2194
BstYI	RGATCY	5 cut(s)	474, 1081, 1273, 2154, 2194
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	1166
BsuRI	GGCC	2 cut(s)	179, 218
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	6 cut(s)	982, 1256, 1302, 1756, 1948, 2012
BtsI	GCAGTG	1 cut(s)	563
BtuMI	TCGCGA	1 cut(s)	431
Cac8I	GCNNGC	7 cut(s)	216, 231, 269, 468, 870, 1921, 1974
CaiI	CAGNNNCTG	1 cut(s)	1454
CfoI	GCGC	4 cut(s)	171, 314, 914, 2058
Cfr10I	RCCGGY	2 cut(s)	28, 214
Cfr13I	GGNCC	3 cut(s)	707, 1751, 2339
CseI	GACGC	6 cut(s)	118, 273, 390, 675, 790, 955
Csp6I	GTAC	5 cut(s)	838, 1191, 1452, 1720, 1840
CviQI	GTAC	5 cut(s)	838, 1191, 1452, 1720, 1840
DdeI	CTNAG	8 cut(s)	540, 636, 735, 855, 1371, 1521, 1977, 2163
DinI	GGCGCC	1 cut(s)	170
DrdI	GACNNNNNNGTC	2 cut(s)	946, 1468
DseDI	GACNNNNNNGTC	2 cut(s)	946, 1468
EaeI	YGGCCR	1 cut(s)	216
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	4 cut(s)	287, 984, 1167, 1878
EarI	CTCTTC	4 cut(s)	287, 984, 1167, 1878
EciI	GGCGGA	2 cut(s)	364, 2049
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	153, 953
Eco24I	GRGCYC	1 cut(s)	893
Eco31I	GGTCTC	3 cut(s)	720, 954, 974
Eco47I	GGWCC	3 cut(s)	707, 1751, 2339
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	6 cut(s)	1191, 1902, 2157, 2166, 2264, 2340
Eco88I	CYCGRG	4 cut(s)	282, 1576, 1656, 1698
EcoRII	CCWGG	5 cut(s)	132, 171, 1118, 1824, 2229
EcoT14I	CCWWGG	2 cut(s)	153, 953
EcoT22I	ATGCAT	3 cut(s)	1359, 1792, 2227
EcoT38I	GRGCYC	1 cut(s)	893
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	153, 953
Esp3I	CGTCTC	1 cut(s)	152
FalI	AAGNNNNNCTT	4 cut(s)	981, 1013, 2255, 2287
FaqI	GGGAC	2 cut(s)	303, 715
FauI	CCCGC	2 cut(s)	384, 2167
FbaI	TGATCA	1 cut(s)	1477
FblI	GTMKAC	1 cut(s)	1472
FokI	GGATG	6 cut(s)	989, 1243, 1289, 1743, 1935, 2019
FriOI	GRGCYC	1 cut(s)	893
FspBI	CTAG	3 cut(s)	230, 1266, 2350
GlaI	GCGC	4 cut(s)	170, 313, 913, 2057
GsaI	CCCAGC	1 cut(s)	1326
GsuI	CTGGAG	3 cut(s)	647, 951, 1199
HaeII	RGCGCY	2 cut(s)	172, 315
HaeIII	GGCC	2 cut(s)	179, 218
HapII	CCGG	9 cut(s)	15, 29, 43, 57, 123, 215, 357, 1196, 2077
HgaI	GACGC	6 cut(s)	118, 273, 390, 675, 790, 955
HhaI	GCGC	4 cut(s)	171, 314, 914, 2058
Hin1I	GRCGYC	4 cut(s)	129, 169, 401, 686
Hin6I	GCGC	4 cut(s)	169, 312, 912, 2056
HinP1I	GCGC	4 cut(s)	169, 312, 912, 2056
HincII	GTYRAC	3 cut(s)	48, 906, 2017
HindII	GTYRAC	3 cut(s)	48, 906, 2017
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	60, 301, 1095
HpaII	CCGG	9 cut(s)	15, 29, 43, 57, 123, 215, 357, 1196, 2077
HphI	GGTGA	7 cut(s)	4, 18, 46, 80, 422, 817, 1008
Hpy166II	GTNNAC	7 cut(s)	48, 825, 906, 1016, 1473, 2017, 2203
Hpy8I	GTNNAC	7 cut(s)	48, 825, 906, 1016, 1473, 2017, 2203
Hpy99I	CGWCG	7 cut(s)	166, 205, 366, 518, 592, 691, 971
HpyAV	CCTTC	6 cut(s)	341, 529, 1002, 1538, 2031, 2190
HpyCH4III	ACNGT	6 cut(s)	410, 532, 812, 1434, 1514, 1743
HpyCH4IV	ACGT	3 cut(s)	189, 254, 902
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 220, 865, 1787, 1871, 1973, 2031, 2062
HpyF3I	CTNAG	8 cut(s)	540, 636, 735, 855, 1371, 1521, 1977, 2163
HpySE526I	ACGT	3 cut(s)	189, 254, 902
Hsp92I	GRCGYC	4 cut(s)	129, 169, 401, 686
HspAI	GCGC	4 cut(s)	169, 312, 912, 2056
KasI	GGCGCC	1 cut(s)	168
Kpn2I	TCCGGA	1 cut(s)	1195
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	1477
LguI	GCTCTTC	2 cut(s)	287, 1167
LmnI	GCTCC	7 cut(s)	17, 449, 666, 932, 994, 1806, 1897
LweI	GCATC	4 cut(s)	642, 1777, 1957, 2080
MaeI	CTAG	3 cut(s)	230, 1266, 2350
MaeII	ACGT	3 cut(s)	189, 254, 902
MaeIII	GTNAC	6 cut(s)	410, 674, 806, 898, 1238, 1684
MflI	RGATCY	5 cut(s)	474, 1081, 1273, 2154, 2194
MhlI	GDGCHC	7 cut(s)	82, 122, 608, 817, 893, 1041, 1803
MluCI	AATT	6 cut(s)	1183, 1494, 1525, 2122, 2325, 2344
MluI	ACGCGT	1 cut(s)	964
Mly113I	GGCGCC	1 cut(s)	169
MmeI	TCCRAC	4 cut(s)	1183, 1496, 1608, 1976
Mph1103I	ATGCAT	3 cut(s)	1359, 1792, 2227
MroI	TCCGGA	1 cut(s)	1195
MroNI	GCCGGC	1 cut(s)	214
MroXI	GAANNNNTTC	2 cut(s)	1012, 2325
MseI	TTAA	5 cut(s)	1278, 1820, 1893, 2061, 2262
MslI	CAYNNNNRTG	2 cut(s)	1028, 1046
MspA1I	CMGCKG	1 cut(s)	2162
MspI	CCGG	9 cut(s)	15, 29, 43, 57, 123, 215, 357, 1196, 2077
MspR9I	CCNGG	7 cut(s)	124, 134, 173, 1120, 1826, 2077, 2231
Mva1269I	GAATGC	3 cut(s)	1609, 2122, 2227
MvaI	CCWGG	5 cut(s)	134, 173, 1120, 1826, 2231
MvnI	CGCG	2 cut(s)	431, 966
MwoI	GCNNNNNNNGC	8 cut(s)	126, 220, 865, 1787, 1871, 1973, 2031, 2062
NaeI	GCCGGC	1 cut(s)	216
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	124, 2077
NgoMIV	GCCGGC	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	229
NlaIV	GGNNCC	9 cut(s)	19, 81, 170, 585, 934, 1083, 1312, 1899, 2196
NmeAIII	GCCGAG	4 cut(s)	244, 325, 1287, 1895
NmuCI	GTSAC	2 cut(s)	410, 806
NruI	TCGCGA	1 cut(s)	431
NsiI	ATGCAT	3 cut(s)	1359, 1792, 2227
NspI	RCATGY	2 cut(s)	1153, 1785
PaeR7I	CTCGAG	3 cut(s)	282, 1576, 1656
PciI	ACATGT	1 cut(s)	1149
PciSI	GCTCTTC	2 cut(s)	287, 1167
PcsI	WCGNNNNNNNCGW	2 cut(s)	587, 899
PctI	GAATGC	3 cut(s)	1609, 2122, 2227
PdiI	GCCGGC	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	1012, 2325
PfeI	GAWTC	3 cut(s)	60, 301, 1095
PflFI	GACNNNGTC	1 cut(s)	1164
PfoI	TCCNGGA	1 cut(s)	132
PluTI	GGCGCC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	1149
PsiI	TTATAA	1 cut(s)	1940
Psp6I	CCWGG	5 cut(s)	132, 171, 1118, 1824, 2229
PspFI	CCCAGC	1 cut(s)	1322
PspGI	CCWGG	5 cut(s)	132, 171, 1118, 1824, 2229
PspN4I	GGNNCC	9 cut(s)	19, 81, 170, 585, 934, 1083, 1312, 1899, 2196
PspPI	GGNCC	3 cut(s)	707, 1751, 2339
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	1454
PsuI	RGATCY	5 cut(s)	474, 1081, 1273, 2154, 2194
PsyI	GACNNNGTC	1 cut(s)	1164
RruI	TCGCGA	1 cut(s)	431
RsaI	GTAC	5 cut(s)	839, 1192, 1453, 1721, 1841
RsaNI	GTAC	5 cut(s)	838, 1191, 1452, 1720, 1840
RseI	CAYNNNNRTG	2 cut(s)	1028, 1046
SapI	GCTCTTC	2 cut(s)	287, 1167
SaqAI	TTAA	5 cut(s)	1278, 1820, 1893, 2061, 2262
Sau96I	GGNCC	3 cut(s)	707, 1751, 2339
ScrFI	CCNGG	7 cut(s)	124, 134, 173, 1120, 1826, 2077, 2231
SduI	GDGCHC	7 cut(s)	82, 122, 608, 817, 893, 1041, 1803
SfaNI	GCATC	4 cut(s)	642, 1777, 1957, 2080
SfcI	CTRYAG	2 cut(s)	566, 624
SfoI	GGCGCC	1 cut(s)	170
Sfr274I	CTCGAG	3 cut(s)	282, 1576, 1656
SinI	GGWCC	3 cut(s)	707, 1751, 2339
SlaI	CTCGAG	3 cut(s)	282, 1576, 1656
SmiMI	CAYNNNNRTG	2 cut(s)	1028, 1046
SmlI	CTYRAG	6 cut(s)	282, 609, 818, 1576, 1656, 2150
SmoI	CTYRAG	6 cut(s)	282, 609, 818, 1576, 1656, 2150
Sse9I	AATT	6 cut(s)	1183, 1494, 1525, 2122, 2325, 2344
SsiI	CCGC	6 cut(s)	328, 349, 377, 1105, 2034, 2160
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	230, 1266, 2350
StyD4I	CCNGG	7 cut(s)	122, 132, 171, 1118, 1824, 2075, 2229
StyI	CCWWGG	2 cut(s)	153, 953
TaaI	ACNGT	6 cut(s)	410, 532, 812, 1434, 1514, 1743
TaiI	ACGT	3 cut(s)	192, 257, 905
TaqI	TCGA	8 cut(s)	116, 183, 283, 304, 340, 1542, 1577, 1657
TaqII	GACCGA	1 cut(s)	936
TasI	AATT	6 cut(s)	1183, 1494, 1525, 2122, 2325, 2344
TatI	WGTACW	2 cut(s)	837, 1719
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	60, 301, 1095
Tru1I	TTAA	5 cut(s)	1278, 1820, 1893, 2061, 2262
Tru9I	TTAA	5 cut(s)	1278, 1820, 1893, 2061, 2262
TseFI	GTSAC	2 cut(s)	410, 806
Tsp45I	GTSAC	2 cut(s)	410, 806
TspDTI	ATGAA	7 cut(s)	548, 897, 1036, 1129, 1346, 1521, 1837
TspGWI	ACGGA	2 cut(s)	429, 462
Tth111I	GACNNNGTC	1 cut(s)	1164
VpaK11BI	GGWCC	3 cut(s)	707, 1751, 2339
XapI	RAATTY	3 cut(s)	1183, 2325, 2344
XceI	RCATGY	2 cut(s)	1153, 1785
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1850, 2205
XhoI	CTCGAG	3 cut(s)	282, 1576, 1656
XmiI	GTMKAC	1 cut(s)	1472
XmnI	GAANNNNTTC	2 cut(s)	1012, 2325
XspI	CTAG	3 cut(s)	230, 1266, 2350
Zsp2I	ATGCAT	3 cut(s)	1359, 1792, 2227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.