Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

11981143 .. 11986577

Gene Structure 5435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGGCTAACAACGCAGGTGAAAATGGAGACTTCAAGTTTGGTCGGATCGGAAGTATGGGCCGTCACGGACTTCCGAAGATCCAAACCCAACATGAGACCAAGGAGGTCTGCCACGACGACACTGCAACTCCGGTCAAAGCCAAGACAGTGGACGAGCTCCACTCTCTTCAGAAGAAGAGGTCATCGCAGCCCAGCACTCCCCACACCGCTACCGGGCAGCAAGGGTCGGCTTTCAACGCCATTTCCGAGGAGGATCGGCAGAAACAGCAGCTCCAGTCGATCAGTGCGTCTTTGGCGTCGCTGACGAGGGAGACGGGGCCGAAGGTGGTGAGAGGTGACCCGGCGAGGAAGACTGATGGGCAGAAAGCCGTGCATGTTGAGCATCATCTGTATGATAGTGCTCTCTTTGGGCTTAGTGATAGTGCTCTCAAGTTCACGCACATCCTCTACAACCTCTCTCCTGCTGAACTGTATGAGCAAGCTATCAAGTACGAGAAAGGTTCATTTATAACAGCATCCGGTGCCTTGGCCACACTGTCTGGCGCAAAGACAGGCCGTTCACCAAGAGACAAACGAGTCGTGAAAGATGAAGAGACCGAAACTGAGCTTTGGTGGGGAAAGGGTTCACCAAACATTGAAATGGATGAACACACTTTCTTAGTGAACAGAGAACGAGCTGTTGATTACTTGAATTCTTTGGACAAGGTATTTGTGAATGATCAATTTTTGAACTGGGACCCAGAACATCGAATCAAAGTTCGAATTGTATCTGCAAGAGCTTACCACTCCCTCTTTATGCATAACATGTGCATCCGACCGACTCCTGAAGAGCTGGAGGAGTTTGGTACTCCAGACTTCACAATATACAATGCTGGGCAGTTCCCATGTAACCGTTATACCCACTACATGACTTCCTCGACCAGCATAGATCTCAATCTTGCTAGAAGGGAAATGGTCATCCTTGGCACCCAGTATGCTGGTGAAATGAAGAAAGGCCTGTTTAGTGTAATGCACTATCTCATGCCTAAGCGTCGAATCCTCTCCCTACATTCTGGCTGCAATATGGGGAAAGATGGCGATGTTGCCCTTTTCTTTGGCTTATCAGGAACTGGGAAGACAACTCTGTCTACAGATCATAATAGGTATTTAATCGGGGATGATGAGCACTGCTGGAGTGACAATGGTGTGTCAAACATTGAAGGTGGCTGCTATGCTAAGTGCATTGATTTGTCGAAAGACAAGGAACCAGATATTTGGAACGCTATCAAATTTGGGACTGTTTTGGAGAATGTTGTGTTTGATGAGCATAATCGAGACGTGGATTATTCAGAGAAATCTGTTACAGAGAACACCCGGGCAGCATATCCTATAGAGTACATACCAAATGCTAAAATACCATGTGTTGGTCCTCACCCTAAAAATGTCATTCTCCTGGCCTGTGATGCATTTGGTGTGCTCCCACCTGTGAGCAAGTTGAGTTTGGCCCAAACAATGTACCATTTTATCAGCGGCTACACTGCTCTGGTTGCTGGAACTGAGGATGGTATCAAGGAACCACAAGCTACATTCTCAGCATGCTTCGGTGCAGCATTTATAATGATGCATCCAACAAAGTATGCGGCAATGTTGGCTGAAAAAATGCAAAAACACGGGGCTACAGGATGGCTCGTCAATACAGGCTGGTCAGCAGGAAGGTATGGAACAGGTAACCGCATCAAATTAGCTTATACCAGGAAGATTATAGATGCTATTCACTCGGGTACCCTTTTGAATGCAACTTACACCAAGACTGAAGTATTTGGACTTGAGATCCCCACTGAGATCGAGGGTGTACCTTCAGAAATTCTGGATCCAATTAACACTTGGTCAGACAAGAAAGCTTACAAAGACACACTACTTAAGTTGGGTGGTCTGTTCAAGAAGAATTTTGAGGTATTCGTGAATCACAAGATTGGGAAAGATAACAAGCTCACAGAGGAAATCCTTGCAGCCGGTCCAATTTTTGATCAGAGACTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

673

Amino Acids

74.86

Weight (kDa)

6.59

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	147 - 614	2.4e-213	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	509, 1595
AarI	CACCTGC	1 cut(s)	5
AasI	GACNNNNNNGTC	2 cut(s)	575, 1123
Acc36I	ACCTGC	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	1760
AccB1I	GGYRCC	3 cut(s)	521, 965, 1760
AccB7I	CCANNNNNTGG	1 cut(s)	1403
AccI	GTMKAC	1 cut(s)	1127
AciI	CCGC	4 cut(s)	207, 1509, 1619, 1711
AclWI	GGATC	6 cut(s)	53, 73, 261, 1804, 1844, 1857
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	4 cut(s)	691, 1268, 1842, 1924
AcuI	CTGAAG	4 cut(s)	152, 846, 1812, 1821
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	6 cut(s)	491, 847, 1376, 1496, 1762, 1833
AfiI	CCNNNNNNNGG	2 cut(s)	213, 1403
AflII	CTTAAG	1 cut(s)	1898
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	8 cut(s)	34, 235, 638, 691, 730, 1199, 1771, 1918
AhlI	ACTAGT	1 cut(s)	2014
AjiI	CACGTC	1 cut(s)	1318
AjnI	CCWGG	2 cut(s)	1431, 1730
Alw21I	GWGCWC	5 cut(s)	159, 403, 427, 1167, 1458
Alw26I	GTCTC	7 cut(s)	21, 89, 305, 561, 587, 1308, 2005
AlwI	GGATC	6 cut(s)	53, 73, 261, 1804, 1844, 1857
AlwNI	CAGNNNCTG	1 cut(s)	1109
Ama87I	CYCGRG	2 cut(s)	1353, 1756
AoxI	GGCC	7 cut(s)	58, 317, 528, 553, 994, 1434, 1482
ApeKI	GCWGC	8 cut(s)	187, 217, 268, 1056, 1206, 1358, 1586, 1988
ApoI	RAATTY	4 cut(s)	691, 1268, 1842, 1924
ArsI	GACNNNNNNTTYG	4 cut(s)	20, 52, 692, 724
Asp700I	GAANNNNTTC	1 cut(s)	622
Asp718I	GGTACC	1 cut(s)	1760
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	6 cut(s)	58, 317, 736, 1406, 1483, 1994
AsuC2I	CCSGG	4 cut(s)	214, 341, 1354, 1355
AsuHPI	GGTGA	7 cut(s)	29, 340, 347, 552, 618, 992, 1403
AsuII	TTCGAA	1 cut(s)	760
AvaI	CYCGRG	2 cut(s)	1353, 1756
AvaII	GGWCC	3 cut(s)	736, 1406, 1994
BaeI	ACNNNNGTAYC	2 cut(s)	1744, 1777
BalI	TGGCCA	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	1849
BanI	GGYRCC	3 cut(s)	521, 965, 1760
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	356, 1121
Bbv12I	GWGCWC	5 cut(s)	159, 403, 427, 1167, 1458
BbvI	GCAGC	8 cut(s)	199, 229, 280, 1043, 1193, 1370, 1598, 2000
BccI	CCATC	4 cut(s)	350, 1067, 1535, 1656
BceAI	ACGGC	3 cut(s)	45, 353, 540
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	2 cut(s)	1433, 1732
BclI	TGATCA	2 cut(s)	718, 2005
BcnI	CCSGG	4 cut(s)	214, 341, 1354, 1355
BcoDI	GTCTC	7 cut(s)	21, 89, 305, 561, 587, 1308, 2005
BcuI	ACTAGT	1 cut(s)	2014
BfaI	CTAG	2 cut(s)	942, 2015
BfmI	CTRYAG	3 cut(s)	1128, 1368, 1656
BfrI	CTTAAG	1 cut(s)	1898
BfuAI	ACCTGC	1 cut(s)	5
BglII	AGATCT	1 cut(s)	928
Bme1390I	CCNGG	6 cut(s)	214, 341, 1354, 1355, 1433, 1732
Bme18I	GGWCC	3 cut(s)	736, 1406, 1994
BmeT110I	CYCGRG	2 cut(s)	1353, 1756
BmgBI	CACGTC	1 cut(s)	1318
BmgT120I	GGNCC	6 cut(s)	58, 317, 736, 1406, 1483, 1994
BmiI	GGNNCC	9 cut(s)	318, 523, 737, 738, 967, 1245, 1554, 1762, 1851
BmrFI	CCNGG	6 cut(s)	214, 341, 1354, 1355, 1433, 1732
BmrI	ACTGGG	3 cut(s)	742, 964, 1119
BmsI	GCATC	8 cut(s)	391, 524, 819, 1432, 1590, 1612, 1722, 1735
BmuI	ACTGGG	3 cut(s)	742, 964, 1119
BpiI	GAAGAC	2 cut(s)	356, 1121
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	4 cut(s)	257, 834, 854, 1192
Bpu10I	CCTNAGC	1 cut(s)	1026
Bpu14I	TTCGAA	1 cut(s)	760
BpuEI	CTTGAG	2 cut(s)	413, 1826
BpuMI	CCSGG	4 cut(s)	214, 341, 1354, 1355
BsaBI	GATNNNNATC	1 cut(s)	933
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	2 cut(s)	89, 587
BsaJI	CCNNGG	5 cut(s)	99, 246, 525, 961, 1353
BsaWI	WCCGGW	2 cut(s)	130, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 1403
Bse118I	RCCGGY	1 cut(s)	1991
Bse1I	ACTGG	4 cut(s)	274, 737, 970, 1114
Bse3DI	GCAATG	1 cut(s)	1629
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	2 cut(s)	1433, 1732
BseDI	CCNNGG	5 cut(s)	99, 246, 525, 961, 1353
BseGI	GGATG	9 cut(s)	441, 515, 649, 810, 957, 1162, 1546, 1603, 1667
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	2 cut(s)	213, 1403
BseMI	GCAATG	1 cut(s)	1629
BseMII	CTCAG	4 cut(s)	594, 1527, 1584, 1809
BseNI	ACTGG	4 cut(s)	274, 737, 970, 1114
BseRI	GAGGAG	2 cut(s)	263, 851
BseXI	GCAGC	8 cut(s)	199, 229, 280, 1043, 1193, 1370, 1598, 2000
BseYI	CCCAGC	2 cut(s)	191, 872
BsgI	GTGCAG	1 cut(s)	1605
Bsh1285I	CGRYCG	1 cut(s)	818
BshFI	GGCC	7 cut(s)	60, 319, 530, 555, 996, 1436, 1484
BshNI	GGYRCC	3 cut(s)	521, 965, 1760
BsiEI	CGRYCG	1 cut(s)	818
BsiHKAI	GWGCWC	5 cut(s)	159, 403, 427, 1167, 1458
BsiHKCI	CYCGRG	2 cut(s)	1353, 1756
BsiSI	CCGG	6 cut(s)	131, 213, 341, 519, 1354, 1992
BslFI	GGGAC	2 cut(s)	749, 1288
BslI	CCNNNNNNNGG	2 cut(s)	213, 1403
BsmAI	GTCTC	7 cut(s)	21, 89, 305, 561, 587, 1308, 2005
BsmBI	CGTCTC	2 cut(s)	305, 1308
BsmFI	GGGAC	2 cut(s)	749, 1288
BsmI	GAATGC	1 cut(s)	1777
BsnI	GGCC	7 cut(s)	60, 319, 530, 555, 996, 1436, 1484
Bso31I	GGTCTC	2 cut(s)	89, 587
BsoBI	CYCGRG	2 cut(s)	1353, 1756
Bsp119I	TTCGAA	1 cut(s)	760
Bsp1286I	GDGCHC	5 cut(s)	159, 403, 427, 1167, 1458
BspACI	CCGC	4 cut(s)	207, 1509, 1619, 1711
BspANI	GGCC	7 cut(s)	60, 319, 530, 555, 996, 1436, 1484
BspCNI	CTCAG	4 cut(s)	595, 1528, 1583, 1810
BspLI	GGNNCC	9 cut(s)	318, 523, 737, 738, 967, 1245, 1554, 1762, 1851
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	6 cut(s)	53, 73, 261, 1804, 1844, 1857
BspQI	GCTCTTC	1 cut(s)	822
BspT104I	TTCGAA	1 cut(s)	760
BspT107I	GGYRCC	3 cut(s)	521, 965, 1760
BspTI	CTTAAG	1 cut(s)	1898
BspTNI	GGTCTC	2 cut(s)	89, 587
BsrDI	GCAATG	1 cut(s)	1629
BsrFI	RCCGGY	1 cut(s)	1991
BsrI	ACTGG	4 cut(s)	274, 737, 970, 1114
BssAI	RCCGGY	1 cut(s)	1991
BssECI	CCNNGG	5 cut(s)	99, 246, 525, 961, 1353
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	3 cut(s)	99, 525, 961
Bst2UI	CCWGG	2 cut(s)	1433, 1732
Bst4CI	ACNGT	5 cut(s)	148, 471, 537, 893, 1279
Bst6I	CTCTTC	4 cut(s)	170, 171, 585, 822
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	1898
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	480, 1576
BstDEI	CTNAG	8 cut(s)	413, 603, 658, 1026, 1215, 1536, 1570, 1818
BstEII	GGTNACC	2 cut(s)	335, 1706
BstF5I	GGATG	9 cut(s)	441, 515, 649, 810, 957, 1162, 1546, 1603, 1667
BstHHI	GCGC	1 cut(s)	545
BstMAI	GTCTC	7 cut(s)	21, 89, 305, 561, 587, 1308, 2005
BstMCI	CGRYCG	1 cut(s)	818
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 236, 265, 293, 379, 521, 1442, 1526, 1628
BstNI	CCWGG	2 cut(s)	1433, 1732
BstNSI	RCATGY	3 cut(s)	377, 808, 1578
BstPI	GGTNACC	2 cut(s)	335, 1706
BstSCI	CCNGG	6 cut(s)	212, 339, 1352, 1353, 1431, 1730
BstSFI	CTRYAG	3 cut(s)	1128, 1368, 1656
BstV1I	GCAGC	8 cut(s)	199, 229, 280, 1043, 1193, 1370, 1598, 2000
BstV2I	GAAGAC	2 cut(s)	356, 1121
BstX2I	RGATCY	4 cut(s)	78, 928, 1809, 1849
BstXI	CCANNNNNNTGG	3 cut(s)	148, 977, 1254
BstYI	RGATCY	4 cut(s)	78, 928, 1809, 1849
BsuRI	GGCC	7 cut(s)	60, 319, 530, 555, 996, 1436, 1484
BtgZI	GCGATG	2 cut(s)	168, 1092
BtrI	CACGTC	1 cut(s)	1318
BtsCI	GGATG	9 cut(s)	441, 515, 649, 810, 957, 1162, 1546, 1603, 1667
BtsI	GCAGTG	3 cut(s)	120, 1165, 1515
BtsIMutI	CAGTG	7 cut(s)	120, 153, 289, 533, 1165, 1515, 1815
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	480, 1576
CaiI	CAGNNNCTG	1 cut(s)	1109
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	1991
Cfr13I	GGNCC	6 cut(s)	58, 317, 736, 1406, 1483, 1994
Cfr9I	CCCGGG	1 cut(s)	1353
CseI	GACGC	3 cut(s)	276, 285, 1019
Csp6I	GTAC	6 cut(s)	490, 846, 1375, 1495, 1761, 1832
CviAII	CATG	8 cut(s)	92, 374, 805, 885, 907, 1021, 1398, 1575
CviQI	GTAC	6 cut(s)	490, 846, 1375, 1495, 1761, 1832
DdeI	CTNAG	8 cut(s)	413, 603, 658, 1026, 1215, 1536, 1570, 1818
DrdI	GACNNNNNNGTC	2 cut(s)	575, 1123
DseDI	GACNNNNNNGTC	2 cut(s)	575, 1123
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	4 cut(s)	170, 171, 585, 822
EarI	CTCTTC	4 cut(s)	170, 171, 585, 822
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	99, 525, 961
Eco147I	AGGCCT	1 cut(s)	996
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	2 cut(s)	89, 587
Eco47I	GGWCC	3 cut(s)	736, 1406, 1994
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	4 cut(s)	152, 846, 1812, 1821
Eco88I	CYCGRG	2 cut(s)	1353, 1756
Eco91I	GGTNACC	2 cut(s)	335, 1706
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	736
EcoO65I	GGTNACC	2 cut(s)	335, 1706
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	2 cut(s)	1431, 1730
EcoT14I	CCWWGG	3 cut(s)	99, 525, 961
EcoT22I	ATGCAT	3 cut(s)	801, 1447, 1605
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	99, 525, 961
Esp3I	CGTCTC	2 cut(s)	305, 1308
FaeI	CATG	8 cut(s)	95, 377, 808, 888, 910, 1024, 1401, 1578
FaqI	GGGAC	2 cut(s)	749, 1288
FatI	CATG	8 cut(s)	91, 373, 804, 884, 906, 1020, 1397, 1574
FbaI	TGATCA	2 cut(s)	718, 2005
FblI	GTMKAC	1 cut(s)	1127
FokI	GGATG	9 cut(s)	428, 502, 656, 797, 944, 1169, 1553, 1590, 1674
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	942, 2015
GlaI	GCGC	1 cut(s)	544
GsaI	CCCAGC	2 cut(s)	195, 876
GsuI	CTGGAG	4 cut(s)	257, 834, 854, 1192
HaeIII	GGCC	7 cut(s)	60, 319, 530, 555, 996, 1436, 1484
HapII	CCGG	6 cut(s)	131, 213, 341, 519, 1354, 1992
HgaI	GACGC	3 cut(s)	276, 285, 1019
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	8 cut(s)	95, 377, 808, 888, 910, 1024, 1401, 1578
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	1878
HinfI	GANTC	5 cut(s)	576, 750, 820, 1035, 1942
HpaII	CCGG	6 cut(s)	131, 213, 341, 519, 1354, 1992
HphI	GGTGA	7 cut(s)	29, 340, 347, 552, 618, 992, 1403
Hpy166II	GTNNAC	7 cut(s)	151, 435, 560, 626, 664, 1128, 1832
Hpy188III	TCNNGA	8 cut(s)	580, 824, 851, 1104, 1313, 1847, 1918, 1939
Hpy8I	GTNNAC	7 cut(s)	151, 435, 560, 626, 664, 1128, 1832
Hpy99I	CGWCG	3 cut(s)	119, 301, 1035
HpyAV	CCTTC	5 cut(s)	316, 939, 1193, 1686, 1845
HpyCH4III	ACNGT	5 cut(s)	148, 471, 537, 893, 1279
HpyCH4IV	ACGT	1 cut(s)	1317
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 236, 265, 293, 379, 521, 1442, 1526, 1628
HpyF3I	CTNAG	8 cut(s)	413, 603, 658, 1026, 1215, 1536, 1570, 1818
HpySE526I	ACGT	1 cut(s)	1317
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	8 cut(s)	95, 377, 808, 888, 910, 1024, 1401, 1578
HspAI	GCGC	1 cut(s)	543
KflI	GGGWCCC	1 cut(s)	736
KpnI	GGTACC	1 cut(s)	1764
Ksp22I	TGATCA	2 cut(s)	718, 2005
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	3 cut(s)	162, 276, 1461
Lsp1109I	GCAGC	8 cut(s)	199, 229, 280, 1043, 1193, 1370, 1598, 2000
LweI	GCATC	8 cut(s)	391, 524, 819, 1432, 1590, 1612, 1722, 1735
MaeI	CTAG	2 cut(s)	942, 2015
MaeII	ACGT	1 cut(s)	1317
MaeIII	GTNAC	6 cut(s)	62, 335, 887, 1175, 1339, 1706
MflI	RGATCY	4 cut(s)	78, 928, 1809, 1849
MhlI	GDGCHC	5 cut(s)	159, 403, 427, 1167, 1458
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	9 cut(s)	691, 722, 762, 1268, 1718, 1842, 1854, 1924, 1998
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	585, 814
MmeI	TCCRAC	3 cut(s)	23, 838, 1631
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	3 cut(s)	801, 1447, 1605
MroXI	GAANNNNTTC	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	3 cut(s)	1148, 1857, 1899
MslI	CAYNNNNRTG	2 cut(s)	390, 638
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	1509
MspCI	CTTAAG	1 cut(s)	1898
MspI	CCGG	6 cut(s)	131, 213, 341, 519, 1354, 1992
MspR9I	CCNGG	6 cut(s)	214, 341, 1354, 1355, 1433, 1732
Mva1269I	GAATGC	1 cut(s)	1777
MvaI	CCWGG	2 cut(s)	1433, 1732
MwoI	GCNNNNNNNGC	9 cut(s)	11, 236, 265, 293, 379, 521, 1442, 1526, 1628
NciI	CCSGG	4 cut(s)	214, 341, 1354, 1355
NlaIII	CATG	8 cut(s)	95, 377, 808, 888, 910, 1024, 1401, 1578
NlaIV	GGNNCC	9 cut(s)	318, 523, 737, 738, 967, 1245, 1554, 1762, 1851
NmuCI	GTSAC	3 cut(s)	62, 335, 1175
NsiI	ATGCAT	3 cut(s)	801, 1447, 1605
NspI	RCATGY	3 cut(s)	377, 808, 1578
NspV	TTCGAA	1 cut(s)	760
PaeI	GCATGC	1 cut(s)	1578
PaqCI	CACCTGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	996
PciI	ACATGT	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 284
PctI	GAATGC	1 cut(s)	1777
PdmI	GAANNNNTTC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	750, 1035, 1942
PflMI	CCANNNNNTGG	1 cut(s)	1403
PleI	GAGTC	2 cut(s)	584, 814
PpsI	GAGTC	2 cut(s)	584, 814
PpuMI	RGGWCCY	1 cut(s)	736
PscI	ACATGT	1 cut(s)	804
PsiI	TTATAA	2 cut(s)	509, 1595
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	1431, 1730
PspEI	GGTNACC	2 cut(s)	335, 1706
PspFI	CCCAGC	2 cut(s)	191, 872
PspGI	CCWGG	2 cut(s)	1431, 1730
PspN4I	GGNNCC	9 cut(s)	318, 523, 737, 738, 967, 1245, 1554, 1762, 1851
PspPI	GGNCC	6 cut(s)	58, 317, 736, 1406, 1483, 1994
PspPPI	RGGWCCY	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	1109
PsuI	RGATCY	4 cut(s)	78, 928, 1809, 1849
RsaI	GTAC	6 cut(s)	491, 847, 1376, 1496, 1762, 1833
RsaNI	GTAC	6 cut(s)	490, 846, 1375, 1495, 1761, 1832
RseI	CAYNNNNRTG	2 cut(s)	390, 638
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	3 cut(s)	1148, 1857, 1899
Sau96I	GGNCC	6 cut(s)	58, 317, 736, 1406, 1483, 1994
SchI	GAGTC	2 cut(s)	585, 814
ScrFI	CCNGG	6 cut(s)	214, 341, 1354, 1355, 1433, 1732
SduI	GDGCHC	5 cut(s)	159, 403, 427, 1167, 1458
SfaNI	GCATC	8 cut(s)	391, 524, 819, 1432, 1590, 1612, 1722, 1735
SfcI	CTRYAG	3 cut(s)	1128, 1368, 1656
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	3 cut(s)	736, 1406, 1994
SmaI	CCCGGG	1 cut(s)	1355
SmiMI	CAYNNNNRTG	2 cut(s)	390, 638
SmlI	CTYRAG	3 cut(s)	428, 1805, 1898
SmoI	CTYRAG	3 cut(s)	428, 1805, 1898
SpeI	ACTAGT	1 cut(s)	2014
SphI	GCATGC	1 cut(s)	1578
Sse9I	AATT	9 cut(s)	691, 722, 762, 1268, 1718, 1842, 1854, 1924, 1998
SseBI	AGGCCT	1 cut(s)	996
SsiI	CCGC	4 cut(s)	207, 1509, 1619, 1711
SspMI	CTAG	2 cut(s)	942, 2015
SstI	GAGCTC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	996
StyD4I	CCNGG	6 cut(s)	212, 339, 1352, 1353, 1431, 1730
StyI	CCWWGG	3 cut(s)	99, 525, 961
TaaI	ACNGT	5 cut(s)	148, 471, 537, 893, 1279
TaiI	ACGT	1 cut(s)	1320
TaqI	TCGA	8 cut(s)	278, 748, 760, 917, 1033, 1232, 1312, 1824
TaqII	GACCGA	2 cut(s)	611, 832
TasI	AATT	9 cut(s)	691, 722, 762, 1268, 1718, 1842, 1854, 1924, 1998
TatI	WGTACW	1 cut(s)	1374
TauI	GCSGC	2 cut(s)	1512, 1622
TfiI	GAWTC	3 cut(s)	750, 1035, 1942
Tru1I	TTAA	3 cut(s)	1148, 1857, 1899
Tru9I	TTAA	3 cut(s)	1148, 1857, 1899
TscAI	CASTG	7 cut(s)	127, 153, 289, 540, 1172, 1522, 1822
TseFI	GTSAC	3 cut(s)	62, 335, 1175
TseI	GCWGC	8 cut(s)	187, 217, 268, 1056, 1206, 1358, 1586, 1988
Tsp45I	GTSAC	3 cut(s)	62, 335, 1175
TspDTI	ATGAA	4 cut(s)	492, 603, 660, 1001
TspGWI	ACGGA	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	1353
TspRI	CASTG	7 cut(s)	127, 153, 289, 540, 1172, 1522, 1822
Van91I	CCANNNNNTGG	1 cut(s)	1403
Vha464I	CTTAAG	1 cut(s)	1898
VpaK11BI	GGWCC	3 cut(s)	736, 1406, 1994
XapI	RAATTY	4 cut(s)	691, 1268, 1842, 1924
XceI	RCATGY	3 cut(s)	377, 808, 1578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1860
XmaI	CCCGGG	1 cut(s)	1353
XmiI	GTMKAC	1 cut(s)	1127
XmnI	GAANNNNTTC	1 cut(s)	622
XspI	CTAG	2 cut(s)	942, 2015
Zsp2I	ATGCAT	3 cut(s)	801, 1447, 1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.