Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000507.1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

29959 .. 31771

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000507.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcaagcagtaacagagaaacaagatcatgaacagagctatggtatgaatgtggtgcagagctatatgagcaggctctacagcacgagaaaggtccttcatcacttgcagtggcgcattggcaactctttctggagccaaaataggtgcatccgacttactcctgaagagctggagaatttcggtactccagacttcactatatacaatgccggtcagttcccgtgtaatcgttacactcattacatgacatcctctacgagcgtagacatcaaccttgctagcaaggaaatggtcatccttggcgccatgtatgccaggaaaatgaagaaaggtcttttcagtttaatgcattatctcaagcctaaatcacacatcctctccctacattctggctgcaatatgcggaaagatggagatgttgccctcttcttcggattgtcagtggtggaaaatgtcacattcgacgagcatacccgagaggtggattacagtgacaaatctattaccgagaattctcgagcagcgtatcccattgagtacattcccaatgcaaagataccatgtgttggccatcatccaaagaatgtgatacttttggcatgtgatgcatttggtgtactcccacctgtcagcaagttaaacctggcgctgaagagggtgtcaatgagccacgggcaacattctcggcttgctctggtgcagcatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

237

Amino Acids

27.06

Weight (kDa)

9.03

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	2 cut(s)	178, 514
AcuI	CTGAAG	2 cut(s)	186, 674
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	3 cut(s)	187, 542, 621
AfiI	CCNNNNNNNGG	2 cut(s)	484, 569
AjnI	CCWGG	2 cut(s)	317, 645
AluBI	AGCT	3 cut(s)	39, 63, 172
AluI	AGCT	3 cut(s)	39, 63, 172
Ama87I	CYCGRG	2 cut(s)	477, 519
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	3 cut(s)	396, 524, 703
ApoI	RAATTY	2 cut(s)	178, 514
AspLEI	GCGC	3 cut(s)	117, 308, 652
AspS9I	GGNCC	1 cut(s)	94
AsuNHI	GCTAGC	1 cut(s)	281
AvaI	CYCGRG	2 cut(s)	477, 519
AvaII	GGWCC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	383, 536
BccI	CCATC	2 cut(s)	407, 582
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	2 cut(s)	319, 647
BciVI	GTATCC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	2 cut(s)	309, 653
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	3 cut(s)	397, 525, 704
BlsI	GCNGC	3 cut(s)	398, 526, 705
Bme1390I	CCNGG	2 cut(s)	319, 647
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	477, 519
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	137, 307
BmrFI	CCNGG	2 cut(s)	319, 647
BmsI	GCATC	2 cut(s)	159, 598
BmtI	GCTAGC	1 cut(s)	285
BpmI	CTGGAG	3 cut(s)	154, 174, 194
BpuEI	CTTGAG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	301, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 569
Bse118I	RCCGGY	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	319, 647
BseDI	CCNNGG	2 cut(s)	301, 673
BseGI	GGATG	5 cut(s)	150, 251, 297, 375, 577
BseLI	CCNNNNNNNGG	2 cut(s)	484, 569
BseXI	GCAGC	2 cut(s)	383, 536
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	573
BshNI	GGYRCC	1 cut(s)	305
BsiHKCI	CYCGRG	2 cut(s)	477, 519
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	484, 569
BsnI	GGCC	1 cut(s)	573
BsoBI	CYCGRG	2 cut(s)	477, 519
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	406
BspANI	GGCC	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	137, 307
BspOI	GCTAGC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	301, 673
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	319, 647
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	162, 434, 650
BstACI	GRCGYC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	6, 74, 283, 693
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	5 cut(s)	150, 251, 297, 375, 577
BstH2I	RGCGCY	2 cut(s)	309, 653
BstHHI	GCGC	3 cut(s)	117, 308, 652
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 314, 608
BstNI	CCWGG	2 cut(s)	319, 647
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	317, 645
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	383, 536
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	5 cut(s)	150, 251, 297, 375, 577
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	3 cut(s)	116, 450, 499
Cac8I	GCNNGC	4 cut(s)	6, 74, 283, 693
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	3 cut(s)	117, 308, 652
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	186, 541, 620
CviAII	CATG	5 cut(s)	29, 247, 310, 564, 603
CviQI	GTAC	3 cut(s)	186, 541, 620
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	3 cut(s)	162, 434, 650
EarI	CTCTTC	3 cut(s)	162, 434, 650
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	186, 674
Eco88I	CYCGRG	2 cut(s)	477, 519
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	317, 645
EcoT14I	CCWWGG	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	354, 613
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	5 cut(s)	32, 250, 313, 567, 606
FatI	CATG	5 cut(s)	28, 246, 309, 563, 602
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	397, 525, 704
FokI	GGATG	5 cut(s)	137, 238, 284, 362, 564
Fsp4HI	GCNGC	3 cut(s)	397, 525, 704
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	3 cut(s)	116, 307, 651
GluI	GCNGC	3 cut(s)	397, 525, 704
GsuI	CTGGAG	3 cut(s)	154, 174, 194
HaeII	RGCGCY	2 cut(s)	309, 653
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	3 cut(s)	117, 308, 652
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	32, 250, 313, 567, 606
Hin6I	GCGC	3 cut(s)	115, 306, 650
HinP1I	GCGC	3 cut(s)	115, 306, 650
HpaII	CCGG	1 cut(s)	213
Hpy166II	GTNNAC	2 cut(s)	268, 620
Hpy188I	TCNGA	2 cut(s)	155, 437
Hpy188III	TCNNGA	5 cut(s)	29, 133, 164, 191, 519
Hpy8I	GTNNAC	2 cut(s)	268, 620
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	9 cut(s)	4, 58, 109, 150, 352, 399, 554, 611, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 314, 608
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	32, 250, 313, 567, 606
HspAI	GCGC	3 cut(s)	115, 306, 650
KasI	GGCGCC	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	383, 536
LweI	GCATC	2 cut(s)	159, 598
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	10, 233, 457, 494
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	5 cut(s)	179, 340, 421, 424, 667
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	2 cut(s)	178, 514
MluNI	TGGCCA	1 cut(s)	573
Mly113I	GGCGCC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	265, 389, 437, 475, 651
Mox20I	TGGCCA	1 cut(s)	573
Mph1103I	ATGCAT	2 cut(s)	354, 613
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	3 cut(s)	347, 641, 712
Msp20I	TGGCCA	1 cut(s)	573
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	319, 647
MvaI	CCWGG	2 cut(s)	319, 647
MwoI	GCNNNNNNNGC	3 cut(s)	69, 314, 608
NarI	GGCGCC	1 cut(s)	306
NdeII	GATC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	5 cut(s)	32, 250, 313, 567, 606
NlaIV	GGNNCC	2 cut(s)	137, 307
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	2 cut(s)	457, 494
NsiI	ATGCAT	2 cut(s)	354, 613
NspI	RCATGY	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	519
PagI	TCATGA	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	398, 526, 705
PluTI	GGCGCC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	317, 645
PspGI	CCWGG	2 cut(s)	317, 645
PspN4I	GGNNCC	2 cut(s)	137, 307
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
RsaI	GTAC	3 cut(s)	187, 542, 621
RsaNI	GTAC	3 cut(s)	186, 541, 620
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	347, 641, 712
SatI	GCNGC	3 cut(s)	397, 525, 704
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	319, 647
SfaNI	GCATC	2 cut(s)	159, 598
SfcI	CTRYAG	1 cut(s)	79
SfoI	GGCGCC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	359, 519
SmoI	CTYRAG	2 cut(s)	359, 519
Sse9I	AATT	2 cut(s)	178, 514
SsiI	CCGC	1 cut(s)	406
SspDI	GGCGCC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	317, 645
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	2 cut(s)	465, 520
TasI	AATT	2 cut(s)	178, 514
TatI	WGTACW	2 cut(s)	540, 619
Tru1I	TTAA	3 cut(s)	347, 641, 712
Tru9I	TTAA	3 cut(s)	347, 641, 712
TscAI	CASTG	3 cut(s)	116, 450, 499
TseFI	GTSAC	2 cut(s)	457, 494
TseI	GCWGC	3 cut(s)	396, 524, 703
Tsp45I	GTSAC	2 cut(s)	457, 494
TspDTI	ATGAA	4 cut(s)	45, 62, 89, 341
TspRI	CASTG	3 cut(s)	116, 450, 499
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	2 cut(s)	178, 514
XceI	RCATGY	1 cut(s)	606
XhoI	CTCGAG	1 cut(s)	519
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	2 cut(s)	354, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.