Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

58571786 .. 58573936

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACTTCAAAGATCCCAGCTGGGTCATTTGCCTTTGTTCAAGTCCATGATGAGATCCAAGCAGTAACAGAGAAACAAGATCATGAACAGAGCTATGGTATGAATGTGGTGCAGAGCTATATGAGCAGGCTCTACAGCATGAGAAAGGTCCTTCATCACTTGCAGTGGCGCATTGGCAACTCTTTCTGGAGCCAAAATCGGTGCATCCGACTTACTCTTGAAGAGCTGGAGAATTTCGGTACTCCAGATTTCACTATATACAATGCCGGTCAGTTCCAGTGTAATCGTTACACTCATTCCATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCATGTACGCCGGGAAAATGAAGAAAGGCACCGGAAAGACGGCTCTATCTACGGATCACAATAGGAACTTAATTGGTGATGATGAACATTGTTGGAATGAGAATGTGGTGGAAAATGTCACATTCGACGAGCATACCCGAGAGGTGGATTACAGTGACAAATCTATTACAGATAAATATCAGTTGTTTGAGTTTCATTGCAAAAAGAATTCTCGAGCAGCGTATCCCATTGAGTACATTCCCAACGCAAATATACCATGTGTTGGCCCTCATCCAAAGAATCAAGTTAAACCTGGCACTGAAGAGGGTGTGAAGGAGCCACAGGCAACATTCTCGGATTGCTCTGGTGCAGCATTTTTAATGTTGCATCCTACCATGTATGCAGCAATGCTGGCTGAGAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

256

Amino Acids

29.0

Weight (kDa)

6.12

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	25 - 130	1.9e-15	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	130 - 156	1.1e-08	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	154 - 214	6.4e-09	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	218 - 255	1.3e-11	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	359, 389
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	3 cut(s)	7, 49, 423
AcsI	RAATTY	2 cut(s)	232, 568
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	241, 368, 596
AfiI	CCNNNNNNNGG	2 cut(s)	505, 623
AgsI	TTSAA	3 cut(s)	9, 41, 221
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	20, 93, 117, 226
AluI	AGCT	4 cut(s)	20, 93, 117, 226
AlwI	GGATC	3 cut(s)	7, 49, 423
Ama87I	CYCGRG	2 cut(s)	498, 573
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	3 cut(s)	578, 710, 743
ApoI	RAATTY	2 cut(s)	232, 568
AspLEI	GCGC	2 cut(s)	171, 362
AspS9I	GGNCC	2 cut(s)	148, 626
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	2 cut(s)	498, 573
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	359, 389
BbvI	GCAGC	3 cut(s)	590, 722, 755
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	373
BfaI	CTAG	2 cut(s)	315, 336
BfmI	CTRYAG	1 cut(s)	133
BfoI	RGCGCY	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	594
BisI	GCNGC	3 cut(s)	579, 711, 744
BlsI	GCNGC	3 cut(s)	580, 712, 745
Bme1390I	CCNGG	2 cut(s)	373, 654
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	2 cut(s)	498, 573
BmgT120I	GGNCC	2 cut(s)	148, 626
BmiI	GGNNCC	4 cut(s)	191, 361, 391, 678
BmrFI	CCNGG	2 cut(s)	373, 654
BmsI	GCATC	2 cut(s)	213, 736
BmtI	GCTAGC	1 cut(s)	339
BpmI	CTGGAG	3 cut(s)	208, 228, 248
BpuMI	CCSGG	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 623
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	2 cut(s)	556, 753
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	5 cut(s)	204, 305, 351, 631, 727
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	505, 623
BseMI	GCAATG	2 cut(s)	556, 753
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	590, 722, 755
BseYI	CCCAGC	2 cut(s)	16, 20
BsgI	GTGCAG	2 cut(s)	131, 729
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	2 cut(s)	359, 389
BsiHKCI	CYCGRG	2 cut(s)	498, 573
BsiSI	CCGG	3 cut(s)	267, 372, 393
BslI	CCNNNNNNNGG	2 cut(s)	505, 623
BsnI	GGCC	1 cut(s)	627
BsoBI	CYCGRG	2 cut(s)	498, 573
Bsp143I	GATC	4 cut(s)	12, 54, 79, 415
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	4 cut(s)	191, 361, 391, 678
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	3 cut(s)	7, 49, 423
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	2 cut(s)	359, 389
BsrDI	GCAATG	2 cut(s)	556, 753
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	4 cut(s)	12, 54, 79, 415
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	2 cut(s)	216, 657
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	128, 337, 753
BstDEI	CTNAG	1 cut(s)	756
BstF5I	GGATG	5 cut(s)	204, 305, 351, 631, 727
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	171, 362
BstKTI	GATC	4 cut(s)	15, 57, 82, 418
BstMBI	GATC	4 cut(s)	12, 54, 79, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 368, 752
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	371, 652
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	590, 722, 755
BstX2I	RGATCY	2 cut(s)	12, 54
BstYI	RGATCY	2 cut(s)	12, 54
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	204, 305, 351, 631, 727
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	4 cut(s)	170, 284, 520, 657
Cac8I	GCNNGC	3 cut(s)	128, 337, 753
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	2 cut(s)	171, 362
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	148, 626
Csp6I	GTAC	3 cut(s)	240, 367, 595
CviAII	CATG	7 cut(s)	47, 83, 139, 301, 364, 618, 736
CviQI	GTAC	3 cut(s)	240, 367, 595
DdeI	CTNAG	1 cut(s)	756
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	4 cut(s)	14, 56, 81, 417
DpnII	GATC	4 cut(s)	12, 54, 79, 415
Eam1104I	CTCTTC	2 cut(s)	216, 657
EarI	CTCTTC	2 cut(s)	216, 657
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	2 cut(s)	498, 573
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	355
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	7 cut(s)	50, 86, 142, 304, 367, 621, 739
FatI	CATG	7 cut(s)	46, 82, 138, 300, 363, 617, 735
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	579, 711, 744
FokI	GGATG	5 cut(s)	191, 292, 338, 618, 714
Fsp4HI	GCNGC	3 cut(s)	579, 711, 744
FspBI	CTAG	2 cut(s)	315, 336
GlaI	GCGC	2 cut(s)	170, 361
GluI	GCNGC	3 cut(s)	579, 711, 744
GsaI	CCCAGC	2 cut(s)	20, 24
GsuI	CTGGAG	3 cut(s)	208, 228, 248
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	3 cut(s)	267, 372, 393
HhaI	GCGC	2 cut(s)	171, 362
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	7 cut(s)	50, 86, 142, 304, 367, 621, 739
Hin6I	GCGC	2 cut(s)	169, 360
HinP1I	GCGC	2 cut(s)	169, 360
HinfI	GANTC	1 cut(s)	640
HpaII	CCGG	3 cut(s)	267, 372, 393
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	209, 697
Hpy188III	TCNNGA	5 cut(s)	83, 187, 218, 245, 573
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	2 cut(s)	161, 667
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	7 cut(s)	112, 163, 204, 561, 710, 727, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 368, 752
HpyF3I	CTNAG	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	7 cut(s)	50, 86, 142, 304, 367, 621, 739
HspAI	GCGC	2 cut(s)	169, 360
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	4 cut(s)	12, 54, 79, 415
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	189, 676
Lsp1109I	GCAGC	3 cut(s)	590, 722, 755
LweI	GCATC	2 cut(s)	213, 736
MaeI	CTAG	2 cut(s)	315, 336
MaeIII	GTNAC	4 cut(s)	64, 287, 478, 515
MalI	GATC	4 cut(s)	14, 56, 81, 417
MboI	GATC	4 cut(s)	12, 54, 79, 415
MboII	GAAGA	3 cut(s)	233, 394, 674
MflI	RGATCY	2 cut(s)	12, 54
MluCI	AATT	3 cut(s)	232, 432, 568
Mly113I	GGCGCC	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	232, 434
MnlI	CCTC	4 cut(s)	319, 496, 639, 658
MseI	TTAA	3 cut(s)	431, 648, 719
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	267, 372, 393
MspR9I	CCNGG	2 cut(s)	373, 654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	123, 368, 752
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	4 cut(s)	12, 54, 79, 415
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	7 cut(s)	50, 86, 142, 304, 367, 621, 739
NlaIV	GGNNCC	4 cut(s)	191, 361, 391, 678
NmuCI	GTSAC	2 cut(s)	478, 515
PaeR7I	CTCGAG	1 cut(s)	573
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	580, 712, 745
PluTI	GGCGCC	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	652
PspFI	CCCAGC	2 cut(s)	16, 20
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	4 cut(s)	191, 361, 391, 678
PspPI	GGNCC	2 cut(s)	148, 626
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	12, 54
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	3 cut(s)	241, 368, 596
RsaNI	GTAC	3 cut(s)	240, 367, 595
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	431, 648, 719
SatI	GCNGC	3 cut(s)	579, 711, 744
Sau3AI	GATC	4 cut(s)	12, 54, 79, 415
Sau96I	GGNCC	2 cut(s)	148, 626
ScrFI	CCNGG	2 cut(s)	373, 654
SetI	ASST	8 cut(s)	22, 95, 119, 150, 228, 333, 507, 655
SfaNI	GCATC	2 cut(s)	213, 736
SfcI	CTRYAG	1 cut(s)	133
SfoI	GGCGCC	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	3 cut(s)	232, 432, 568
SspDI	GGCGCC	1 cut(s)	359
SspMI	CTAG	2 cut(s)	315, 336
StyD4I	CCNGG	2 cut(s)	371, 652
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	486, 574
TasI	AATT	3 cut(s)	232, 432, 568
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	3 cut(s)	431, 648, 719
Tru9I	TTAA	3 cut(s)	431, 648, 719
TscAI	CASTG	4 cut(s)	170, 284, 520, 664
TseFI	GTSAC	2 cut(s)	478, 515
TseI	GCWGC	3 cut(s)	578, 710, 743
Tsp45I	GTSAC	2 cut(s)	478, 515
TspDTI	ATGAA	6 cut(s)	99, 116, 143, 395, 459, 545
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	4 cut(s)	170, 284, 520, 664
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	232, 568
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	2 cut(s)	315, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.