Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

21788497 .. 21789638

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCACATTCGACGAGCATACCCGAGAAGTGGATTATAGTGACAAATCTATTACAGGTTGCTGGAACTGAAGAGGGTGTGAAGGAGCCACGGGCAACATTCTCGGCTTGCTTCGGTGCAGCATTTTTGATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAACATGGTGCAACTGCATGGCTGGCCAAACTGTCAAACAAGAATGCATATGAGGAAACTCCACTGAAGCTGGCTAGCCTATTCACGACCAACTTTTCACAGACTGCAAGATTGGCAACGACAATAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

102

Amino Acids

11.18

Weight (kDa)

9.21

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	19 - 68	4.4e-20	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	90, 263
AfiI	CCNNNNNNNGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	119, 152
AsuNHI	GCTAGC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	131, 164
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	120, 153
BlsI	GCNGC	2 cut(s)	121, 154
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	2 cut(s)	145, 162
BmtI	GCTAGC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	131, 164
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	23
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	5 cut(s)	109, 162, 201, 249, 253
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 200, 290
BstV1I	GCAGC	2 cut(s)	131, 164
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	5 cut(s)	109, 162, 201, 249, 253
CviAII	CATG	2 cut(s)	182, 195
CviJI	RGCY	8 cut(s)	88, 107, 164, 199, 203, 247, 251, 255
CviKI_1	RGCY	8 cut(s)	88, 107, 164, 199, 203, 247, 251, 255
DdeI	CTNAG	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	90, 263
Eco88I	CYCGRG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	2 cut(s)	185, 198
FaiI	YATR	7 cut(s)	20, 38, 150, 183, 196, 226, 228
FatI	CATG	2 cut(s)	181, 194
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	120, 153
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	120, 153
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	120, 153
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	185, 198
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	8 cut(s)	119, 136, 152, 175, 188, 194, 224, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 200, 290
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	185, 198
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	41, 48, 146, 185, 233
Lsp1109I	GCAGC	2 cut(s)	131, 164
LweI	GCATC	2 cut(s)	145, 162
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	3, 40
MboII	GAAGA	2 cut(s)	83, 181
MlsI	TGGCCA	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	2 cut(s)	67, 223
Mox20I	TGGCCA	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	161, 200, 290
NdeI	CATATG	1 cut(s)	226
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	185, 198
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	3, 40
NsiI	ATGCAT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	121, 154
PspN4I	GGNNCC	1 cut(s)	87
SatI	GCNGC	2 cut(s)	120, 153
SetI	ASST	3 cut(s)	60, 249, 308
SfaNI	GCATC	2 cut(s)	145, 162
SspMI	CTAG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	3, 40
TseI	GCWGC	2 cut(s)	119, 152
Tsp45I	GTSAC	2 cut(s)	3, 40
TspRI	CASTG	1 cut(s)	246
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.