Rorug02G0162300

Phosphoenolpyruvate carboxykinase ATP

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
14491980 .. 14492525
546 bp
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UTR
Exon/CDS
Intron
Rorug02G0162300.1

Sequence Viewer

Length: 546 bp
ATGTCTTCAAAAAAAAAGAGACAGCTACTTGCTCGCATCGGTGGAATTCAGAAAGCTACTGATAGGTACAACAATCCCTTTCTTCTCAAACTTGAAGCTAAGCTTTTGATCGGCCTTAGGGAATTATGGCAGTGGAGTTACTTGGAGGAGCAGTATTTAGTCTGCTGGGAGTTACTTGGAGGAGCAGTATTTAGTCTGCTGTGTGATGGGGTTAAGCAAGCGATTGGAAAGACTGGGACTTTCAAATACCTCCTCAGAGATATCAAATTCACGCTAGAGTCTTTGAACAAACTACACTCCACAGCCATCCAACAAATTGGAGAGTACAACCTGGAATTGGGTCTCCCAAATGACGAAATTGAAGACCTCAGAGAACAGATGGAGCAAGGGGCGAAGCTTGTTTGCAACTTGTCCAATTTTCGCACGTGGAACTACTGCTGCATCAATTGTTACACTGACCAACTGGTTGACTTGGATAGGTCTCTCAAAAGAAACCCTAACAACAATGTACATAATAAACTTGAATCAAAGGAAATTGATCACTAA

Protein Analysis

181

Amino Acids

21.01

Weight (kDa)

7.57

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 61 - 176 9.1e-14 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 45, 266
AcvI CACGTG 1 cut(s) 426
AfaI GTAC 3 cut(s) 68, 326, 510
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 6 cut(s) 9, 95, 244, 286, 362, 524
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 5 cut(s) 25, 56, 98, 103, 397
AluI AGCT 5 cut(s) 25, 56, 98, 103, 397
Alw26I GTCTC 3 cut(s) 13, 347, 486
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 438
ApoI RAATTY 2 cut(s) 45, 266
AxyI CCTNAGG 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 425
BccI CCATC 3 cut(s) 200, 314, 373
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 13, 347, 486
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 439
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 332
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 45, 450
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 347, 486
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 238, 468
Bse21I CCTNAGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 268, 382
BseNI ACTGG 2 cut(s) 238, 468
BseRI GAGGAG 3 cut(s) 161, 195, 242
BseXI GCAGC 1 cut(s) 425
BseYI CCCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 3 cut(s) 13, 347, 486
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 2 cut(s) 347, 486
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 108, 538
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 267, 381
BspTNI GGTCTC 2 cut(s) 347, 486
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 2 cut(s) 238, 468
BssMI GATC 2 cut(s) 108, 538
Bst2UI CCWGG 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 508
BstBAI YACGTR 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 34, 219
BstDEI CTNAG 4 cut(s) 99, 116, 254, 368
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 2 cut(s) 111, 541
BstMAI GTCTC 3 cut(s) 13, 347, 486
BstMBI GATC 2 cut(s) 108, 538
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 453
Cac8I GCNNGC 2 cut(s) 34, 219
Csp6I GTAC 3 cut(s) 67, 325, 509
CviJI RGCY 7 cut(s) 25, 56, 98, 103, 114, 305, 397
CviKI_1 RGCY 7 cut(s) 25, 56, 98, 103, 114, 305, 397
CviQI GTAC 3 cut(s) 67, 325, 509
DdeI CTNAG 4 cut(s) 99, 116, 254, 368
DpnI GATC 2 cut(s) 110, 540
DpnII GATC 2 cut(s) 108, 538
Eco31I GGTCTC 2 cut(s) 347, 486
Eco32I GATATC 1 cut(s) 262
Eco72I CACGTG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 330
EcoRV GATATC 1 cut(s) 262
FaiI YATR 2 cut(s) 127, 513
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 250
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 439
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 2 cut(s) 101, 395
HinfI GANTC 2 cut(s) 278, 524
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 3 cut(s) 51, 257, 371
Hpy8I GTNNAC 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 2 cut(s) 405, 441
HpyF3I CTNAG 4 cut(s) 99, 116, 254, 368
HpySE526I ACGT 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 108, 538
LmnI GCTCC 3 cut(s) 148, 182, 382
LpnPI CCDG 5 cut(s) 151, 219, 317, 344, 449
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 2 cut(s) 45, 450
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 3 cut(s) 137, 171, 449
MalI GATC 2 cut(s) 110, 540
MboI GATC 2 cut(s) 108, 538
MboII GAAGA 2 cut(s) 74, 374
MfeI CAATTG 1 cut(s) 445
MluCI AATT 9 cut(s) 45, 122, 266, 315, 335, 357, 415, 445, 534
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 5 cut(s) 139, 173, 260, 263, 377
MseI TTAA 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 332
NdeII GATC 2 cut(s) 108, 538
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 1 cut(s) 286
PmaCI CACGTG 1 cut(s) 426
PmlI CACGTG 1 cut(s) 426
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 330
PspCI CACGTG 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 330
RsaI GTAC 3 cut(s) 68, 326, 510
RsaNI GTAC 3 cut(s) 67, 325, 509
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 2 cut(s) 108, 538
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 332
SfaNI GCATC 2 cut(s) 45, 450
Sse9I AATT 9 cut(s) 45, 122, 266, 315, 335, 357, 415, 445, 534
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 330
TaiI ACGT 1 cut(s) 428
TasI AATT 9 cut(s) 45, 122, 266, 315, 335, 357, 415, 445, 534
TatI WGTACW 2 cut(s) 324, 508
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 137, 460
TseI GCWGC 1 cut(s) 438
TspRI CASTG 2 cut(s) 137, 460
XapI RAATTY 2 cut(s) 45, 266
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.