Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Forward (+)

16405030 .. 16407090

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCATAATATGTGTATCCGACCTACACCTGAAGAGCTGGAGAATTTCGGTACTCCAGACTTCACCATATACAATGCGGGTCAGTTCCTATGTAATTGTTACACTCACTACATGACATCCTCTACTAGCACAACTCTAACTACAGATCACAACAGATACTTAATTGGAGACGATGAACACTGCTGGAGTGATAATGGTGTATCAAATATTGAAGGTGGTTGTTATGCCAAGTGCATTGATCTCTCTAAAGAGAAAGAGCGCGACATCTGGAATGCCATCAAGTTTGGGTCTGAGAATACTCGAGTAGCATATCCTATTGAGTATATCCCCAACGCAAAAATACCATGTACCATGTATCATTTCATCAGTGGCTATACTGCCTTGGTAACGTTGCTGGAACCGAAGAGGGTGTCTGCATGTTTTGGTGCTGCGTTTCTGATGCTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATAGTGCAACTTCATGGCTGGTTAACACTGGTTGGTCTGGTGGAAGGTACGGATCGGGAAAGCGCATTAAGCTATCTGACACCCTAAAAATCATTGATGCCATACACTCTGGCAGCCTCTTAAATGCAAATTACAAGAAGACTGAAGTGTTTGGACTTGAGATCCCCGCTGAGATTGAGGGAGTGCCTTCAGAGATGTTGGATCCAGTTAACACTTGGTCGGACAAGAAGGCATACCAGGAAACACTGCTTAAGTTGGCTGGCCTATTTAAAACCAACTTCGAGACTTTCACAAACTACAAGATTGGCAAGGACAACAAGTTGACAGAAGACATCCTTGCAGCTGGCCCAAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

283

Amino Acids

31.63

Weight (kDa)

6.08

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	43 - 97	1.4e-24	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	117 - 228	4e-40	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	77, 657
AclI	AACGTT	1 cut(s)	389
AclWI	GGATC	4 cut(s)	550, 646, 686, 699
AcsI	RAATTY	2 cut(s)	43, 841
AcuI	CTGAAG	3 cut(s)	51, 654, 663
AfaI	GTAC	3 cut(s)	52, 349, 539
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	3 cut(s)	37, 562, 833
AluI	AGCT	3 cut(s)	37, 562, 833
Alw26I	GTCTC	2 cut(s)	162, 767
AlwI	GGATC	4 cut(s)	550, 646, 686, 699
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	2 cut(s)	751, 835
ApeKI	GCWGC	5 cut(s)	428, 442, 461, 603, 830
ApoI	RAATTY	2 cut(s)	43, 841
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	2 cut(s)	261, 555
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	691
BbsI	GAAGAC	2 cut(s)	635, 825
BbvI	GCAGC	5 cut(s)	415, 429, 473, 615, 842
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	162, 767
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	5 cut(s)	429, 443, 462, 604, 831
BlsI	GCNGC	5 cut(s)	430, 444, 463, 605, 832
Bme1390I	CCNGG	1 cut(s)	728
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	2 cut(s)	399, 693
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	4 cut(s)	429, 454, 471, 577
BpiI	GAAGAC	2 cut(s)	635, 825
BpmI	CTGGAG	3 cut(s)	39, 59, 205
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	523, 695
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	116, 445, 822
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	3 cut(s)	282, 465, 651
BseNI	ACTGG	2 cut(s)	523, 695
BseXI	GCAGC	5 cut(s)	415, 429, 473, 615, 842
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	753, 837
BsiHKCI	CYCGRG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	162, 767
BsmBI	CGTCTC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	753, 837
BsoBI	CYCGRG	1 cut(s)	300
Bsp143I	GATC	5 cut(s)	145, 238, 542, 651, 691
BspACI	CCGC	2 cut(s)	77, 657
BspANI	GGCC	2 cut(s)	753, 837
BspCNI	CTCAG	3 cut(s)	283, 466, 652
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	399, 693
BspPI	GGATC	4 cut(s)	550, 646, 686, 699
BspQI	GCTCTTC	1 cut(s)	27
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	523, 695
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	145, 238, 542, 651, 691
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	728
Bst6I	CTCTTC	2 cut(s)	27, 398
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	471, 751, 835
BstDEI	CTNAG	3 cut(s)	291, 474, 660
BstF5I	GGATG	3 cut(s)	116, 445, 822
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	261, 555
BstKTI	GATC	5 cut(s)	148, 241, 545, 654, 694
BstMAI	GTCTC	2 cut(s)	162, 767
BstMBI	GATC	5 cut(s)	145, 238, 542, 651, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 559
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	415, 429, 473, 615, 842
BstV2I	GAAGAC	2 cut(s)	635, 825
BstX2I	RGATCY	2 cut(s)	651, 691
BstYI	RGATCY	2 cut(s)	651, 691
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	753, 837
BtsCI	GGATG	3 cut(s)	116, 445, 822
BtsI	GCAGTG	2 cut(s)	178, 734
BtsIMutI	CAGTG	4 cut(s)	178, 373, 516, 734
Cac8I	GCNNGC	3 cut(s)	471, 751, 835
CfoI	GCGC	2 cut(s)	261, 555
Cfr13I	GGNCC	1 cut(s)	836
Csp6I	GTAC	3 cut(s)	51, 348, 538
CviAII	CATG	5 cut(s)	112, 345, 352, 417, 504
CviQI	GTAC	3 cut(s)	51, 348, 538
DdeI	CTNAG	3 cut(s)	291, 474, 660
DpnI	GATC	5 cut(s)	147, 240, 544, 653, 693
DpnII	GATC	5 cut(s)	145, 238, 542, 651, 691
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	27, 398
EarI	CTCTTC	2 cut(s)	27, 398
Eco130I	CCWWGG	1 cut(s)	381
Eco57I	CTGAAG	3 cut(s)	51, 654, 663
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	5 cut(s)	115, 348, 355, 420, 507
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FatI	CATG	5 cut(s)	111, 344, 351, 416, 503
FauI	CCCGC	2 cut(s)	70, 664
Fnu4HI	GCNGC	5 cut(s)	429, 443, 462, 604, 831
FokI	GGATG	3 cut(s)	103, 432, 809
Fsp4HI	GCNGC	5 cut(s)	429, 443, 462, 604, 831
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	2 cut(s)	260, 554
GluI	GCNGC	5 cut(s)	429, 443, 462, 604, 831
GsuI	CTGGAG	3 cut(s)	39, 59, 205
HaeIII	GGCC	2 cut(s)	753, 837
HhaI	GCGC	2 cut(s)	261, 555
Hin1II	CATG	5 cut(s)	115, 348, 355, 420, 507
Hin6I	GCGC	2 cut(s)	259, 553
HinP1I	GCGC	2 cut(s)	259, 553
HincII	GTYRAC	3 cut(s)	514, 700, 813
HindII	GTYRAC	3 cut(s)	514, 700, 813
HpaI	GTTAAC	2 cut(s)	514, 700
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	514, 700, 813
Hpy188I	TCNGA	6 cut(s)	20, 292, 438, 568, 682, 712
Hpy188III	TCNNGA	4 cut(s)	56, 268, 546, 772
Hpy8I	GTNNAC	3 cut(s)	514, 700, 813
HpyAV	CCTTC	4 cut(s)	206, 528, 687, 712
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	9 cut(s)	4, 234, 416, 445, 461, 484, 497, 617, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 559
HpyF3I	CTNAG	3 cut(s)	291, 474, 660
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	5 cut(s)	115, 348, 355, 420, 507
HspAI	GCGC	2 cut(s)	259, 553
KspAI	GTTAAC	2 cut(s)	514, 700
Kzo9I	GATC	5 cut(s)	145, 238, 542, 651, 691
LguI	GCTCTTC	1 cut(s)	27
Lsp1109I	GCAGC	5 cut(s)	415, 429, 473, 615, 842
LweI	GCATC	4 cut(s)	429, 454, 471, 577
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	98, 385
MalI	GATC	5 cut(s)	147, 240, 544, 653, 693
MboI	GATC	5 cut(s)	145, 238, 542, 651, 691
MboII	GAAGA	5 cut(s)	44, 415, 490, 640, 830
MflI	RGATCY	2 cut(s)	651, 691
MluCI	AATT	5 cut(s)	43, 94, 162, 619, 841
MmeI	TCCRAC	3 cut(s)	43, 669, 690
MnlI	CCTC	4 cut(s)	130, 399, 617, 661
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	7 cut(s)	161, 513, 558, 611, 699, 741, 759
MspA1I	CMGCKG	2 cut(s)	659, 833
MspCI	CTTAAG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	470, 559
NdeII	GATC	5 cut(s)	145, 238, 542, 651, 691
NlaIII	CATG	5 cut(s)	115, 348, 355, 420, 507
NlaIV	GGNNCC	2 cut(s)	399, 693
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	430, 444, 463, 605, 832
Psp1406I	AACGTT	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	399, 693
PspPI	GGNCC	1 cut(s)	836
PspXI	VCTCGAGB	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	651, 691
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	52, 349, 539
RsaNI	GTAC	3 cut(s)	51, 348, 538
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	7 cut(s)	161, 513, 558, 611, 699, 741, 759
SatI	GCNGC	5 cut(s)	429, 443, 462, 604, 831
Sau3AI	GATC	5 cut(s)	145, 238, 542, 651, 691
Sau96I	GGNCC	1 cut(s)	836
ScrFI	CCNGG	1 cut(s)	728
SetI	ASST	8 cut(s)	25, 31, 39, 217, 392, 539, 564, 835
SfaNI	GCATC	4 cut(s)	429, 454, 471, 577
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	300, 647, 740
SmoI	CTYRAG	3 cut(s)	300, 647, 740
Sse9I	AATT	5 cut(s)	43, 94, 162, 619, 841
SsiI	CCGC	2 cut(s)	77, 657
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	1 cut(s)	381
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	301, 771
TasI	AATT	5 cut(s)	43, 94, 162, 619, 841
Tru1I	TTAA	7 cut(s)	161, 513, 558, 611, 699, 741, 759
Tru9I	TTAA	7 cut(s)	161, 513, 558, 611, 699, 741, 759
TscAI	CASTG	4 cut(s)	185, 373, 523, 741
TseI	GCWGC	5 cut(s)	428, 442, 461, 603, 830
TspDTI	ATGAA	3 cut(s)	189, 352, 492
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	4 cut(s)	185, 373, 523, 741
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	2 cut(s)	43, 841
XceI	RCATGY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702
XhoI	CTCGAG	1 cut(s)	300
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.