Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00382

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

24090 .. 25582

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCCAAAGATGTGTATCAGTTTAATGTAACAAAATTCACCTATGTGTGTGGCAGGTGCATCCGACTTACTCCTGAAGAGCTGGAGAATTTCGGTACTCCAGACTTCACTATATACAATGCCGGTCAGTTCCCGTGTAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCGTGTACGCCTGGAAAATGAAGAAAGTGGTGGAAAATGTCACATTCGACGAGCATACCGGAGAGGTGGATTACAGTGACAAATCTATTACAGTTGCAGAGAATTCTCGAGCAGCGTATCCCATTGAGTACATTCCCAACGCAAAGATACCATGTGTTGGCCCTCATCCAAAGAATGTGATACTTTTGGCATGTGATGCATTTGGTGTACTCCCAAGTCCCACCTGTCAGCAAGTTAAACCTGGCGCTGAAGAGGGTGTGAAGGAGCCAGAGGCAACATTCTCGGCTTGCTCTGGTGCAGCACTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTCGAAGGTATGCAAATTCAAATAACATCATAAAAAACGTCATAGGACTGATCAATTTCCAAAACGGCATTGTTTGGGTTCAGGGTATAGCAGTTAGGTTCTATATGATACAGATAATGGTAAATGATGTAGTTCGAGATACAACCAGAAGATCAACACCAAAAAGAGCAGCAGATGATATAAGCCTCTATCTTTGTTCCCGGCAGCTATGGATCAGGAAGCCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

281

Amino Acids

31.48

Weight (kDa)

8.69

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	20 - 83	2.2e-11	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	77 - 214	1.3e-43	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	839
AclWI	GGATC	1 cut(s)	836
AcsI	RAATTY	4 cut(s)	35, 88, 319, 631
AcuI	CTGAAG	2 cut(s)	96, 486
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	4 cut(s)	97, 224, 347, 426
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	636
AjnI	CCWGG	2 cut(s)	227, 457
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	82, 823
AluI	AGCT	2 cut(s)	82, 823
AlwI	GGATC	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	5 cut(s)	329, 515, 548, 785, 820
ApoI	RAATTY	4 cut(s)	35, 88, 319, 631
AspLEI	GCGC	2 cut(s)	218, 464
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	5 cut(s)	341, 527, 560, 797, 832
BceAI	ACGGC	2 cut(s)	203, 697
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	2 cut(s)	229, 459
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	817
BfaI	CTAG	2 cut(s)	171, 192
BfoI	RGCGCY	2 cut(s)	219, 465
BfuAI	ACCTGC	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	6 cut(s)	330, 516, 549, 786, 821, 839
BlsI	GCNGC	6 cut(s)	331, 517, 550, 787, 822, 840
Bme1390I	CCNGG	3 cut(s)	229, 459, 817
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	217, 483
BmrFI	CCNGG	3 cut(s)	229, 459, 817
BmsI	GCATC	4 cut(s)	69, 403, 541, 558
BmtI	GCTAGC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	84, 104
BpuMI	CCSGG	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	610
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	229, 459
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	5 cut(s)	60, 161, 207, 382, 532
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	610
BseXI	GCAGC	5 cut(s)	341, 527, 560, 797, 832
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	123, 276, 817
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	666, 767, 828
BspACI	CCGC	1 cut(s)	839
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	217, 483
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	836
BspQI	GCTCTTC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	666, 767, 828
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	229, 459
Bst4CI	ACNGT	2 cut(s)	293, 310
Bst6I	CTCTTC	2 cut(s)	72, 462
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	193, 505, 558
BstDEI	CTNAG	1 cut(s)	561
BstF5I	GGATG	5 cut(s)	60, 161, 207, 382, 532
BstH2I	RGCGCY	2 cut(s)	219, 465
BstHHI	GCGC	2 cut(s)	218, 464
BstKTI	GATC	3 cut(s)	669, 770, 831
BstMBI	GATC	3 cut(s)	666, 767, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 413, 557
BstNI	CCWGG	2 cut(s)	229, 459
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	227, 457, 815
BstV1I	GCAGC	5 cut(s)	341, 527, 560, 797, 832
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	5 cut(s)	60, 161, 207, 382, 532
BtsIMutI	CAGTG	2 cut(s)	298, 603
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	3 cut(s)	193, 505, 558
CfoI	GCGC	2 cut(s)	218, 464
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	96, 223, 346, 425
CviAII	CATG	5 cut(s)	157, 369, 408, 578, 591
CviJI	RGCY	9 cut(s)	82, 378, 484, 503, 560, 595, 801, 823, 838
CviKI_1	RGCY	9 cut(s)	82, 378, 484, 503, 560, 595, 801, 823, 838
CviQI	GTAC	4 cut(s)	96, 223, 346, 425
DdeI	CTNAG	1 cut(s)	561
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	3 cut(s)	668, 769, 830
DpnII	GATC	3 cut(s)	666, 767, 828
Eam1104I	CTCTTC	2 cut(s)	72, 462
EarI	CTCTTC	2 cut(s)	72, 462
Eco130I	CCWWGG	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	96, 486
Eco88I	CYCGRG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	227, 457
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	418
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	5 cut(s)	160, 372, 411, 581, 594
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	5 cut(s)	156, 368, 407, 577, 590
FbaI	TGATCA	1 cut(s)	666
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	330, 516, 549, 786, 821, 839
FokI	GGATG	5 cut(s)	47, 148, 194, 369, 519
Fsp4HI	GCNGC	6 cut(s)	330, 516, 549, 786, 821, 839
FspBI	CTAG	2 cut(s)	171, 192
GlaI	GCGC	2 cut(s)	217, 463
GluI	GCNGC	6 cut(s)	330, 516, 549, 786, 821, 839
GsuI	CTGGAG	2 cut(s)	84, 104
HaeII	RGCGCY	2 cut(s)	219, 465
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	3 cut(s)	123, 276, 817
HhaI	GCGC	2 cut(s)	218, 464
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	160, 372, 411, 581, 594
Hin6I	GCGC	2 cut(s)	216, 462
HinP1I	GCGC	2 cut(s)	216, 462
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HpaII	CCGG	3 cut(s)	123, 276, 817
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	4 cut(s)	178, 223, 425, 601
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	5 cut(s)	74, 101, 324, 752, 832
Hpy8I	GTNNAC	4 cut(s)	178, 223, 425, 601
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	472, 615
HpyCH4III	ACNGT	2 cut(s)	293, 310
HpyCH4IV	ACGT	1 cut(s)	654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 413, 557
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	654
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	160, 372, 411, 581, 594
HspAI	GCGC	2 cut(s)	216, 462
KasI	GGCGCC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	3 cut(s)	666, 767, 828
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	5 cut(s)	341, 527, 560, 797, 832
LweI	GCATC	4 cut(s)	69, 403, 541, 558
MaeI	CTAG	2 cut(s)	171, 192
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	4 cut(s)	28, 143, 256, 293
MalI	GATC	3 cut(s)	668, 769, 830
MboI	GATC	3 cut(s)	666, 767, 828
MboII	GAAGA	5 cut(s)	89, 250, 479, 577, 777
MluCI	AATT	5 cut(s)	35, 88, 319, 631, 670
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	175, 274, 390, 463, 481, 812
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	4 cut(s)	24, 453, 524, 844
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	3 cut(s)	123, 276, 817
MspR9I	CCNGG	3 cut(s)	229, 459, 817
MvaI	CCWGG	2 cut(s)	229, 459
MwoI	GCNNNNNNNGC	3 cut(s)	224, 413, 557
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	817
NdeII	GATC	3 cut(s)	666, 767, 828
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	5 cut(s)	160, 372, 411, 581, 594
NlaIV	GGNNCC	2 cut(s)	217, 483
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	2 cut(s)	256, 293
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	6 cut(s)	331, 517, 550, 787, 822, 840
PluTI	GGCGCC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	227, 457
PspGI	CCWGG	2 cut(s)	227, 457
PspN4I	GGNNCC	2 cut(s)	217, 483
PspPI	GGNCC	1 cut(s)	377
RsaI	GTAC	4 cut(s)	97, 224, 347, 426
RsaNI	GTAC	4 cut(s)	96, 223, 346, 425
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	24, 453, 524, 844
SatI	GCNGC	6 cut(s)	330, 516, 549, 786, 821, 839
Sau3AI	GATC	3 cut(s)	666, 767, 828
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	229, 459, 817
SfaNI	GCATC	4 cut(s)	69, 403, 541, 558
SfoI	GGCGCC	1 cut(s)	217
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	5 cut(s)	35, 88, 319, 631, 670
SsiI	CCGC	1 cut(s)	839
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	171, 192
StyD4I	CCNGG	3 cut(s)	227, 457, 815
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	293, 310
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	4 cut(s)	264, 325, 619, 751
TasI	AATT	5 cut(s)	35, 88, 319, 631, 670
TatI	WGTACW	2 cut(s)	345, 424
TauI	GCSGC	1 cut(s)	841
Tru1I	TTAA	4 cut(s)	24, 453, 524, 844
Tru9I	TTAA	4 cut(s)	24, 453, 524, 844
TscAI	CASTG	2 cut(s)	298, 610
TseFI	GTSAC	2 cut(s)	256, 293
TseI	GCWGC	5 cut(s)	329, 515, 548, 785, 820
Tsp45I	GTSAC	2 cut(s)	256, 293
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	298, 610
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	4 cut(s)	35, 88, 319, 631
XceI	RCATGY	1 cut(s)	411
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	171, 192
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.