Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

58493401 .. 58494951

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGCAAGGAAATGGTCATCCTTGGCGCCATGTACGCCGGGAAAATGAAGAAAGTGGTGGAAAATGTCACATTCGACGAGCATACCCGAGAGGTGGATTACAGTGACAAATCTATTACAGAGAATTCTCGAGCAGCGTATCCGATTGAGTACATTCCCAACGCAAAGATACCATGTGTTGGCCCTCATCCTAACAATGTGATACTTTTGGCATGTGATGCATTTGGTGTACTCCCACCTGGTGTGAAGGAGCCACGGGCAACATTCTCGGCTTGCTCTCGTGCAGCATTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGCTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTGGAAGCTTATTGAAAGCAGACTACAAGAAAACTGAAGATTCAGACTTGAGATCCCCACCGAGGTTGAGGGAGTGCCTTCAGAATGGATCCAAGGAACTCTGTCAGTCAGATTTCTCTATACGTATTTCCCTTATCTATTACAGATTAGTCTTGGTCCAACTTCTGTATGATCTCCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

201

Amino Acids

22.26

Weight (kDa)

8.22

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	30 - 91	1.4e-23	Phosphoenolpyruvate carboxykinase
PEPCK_ATP	PF01293	92 - 143	4.9e-20	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	3 cut(s)	465, 501, 514
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	474, 482
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	3 cut(s)	68, 185, 264
AfiI	CCNNNNNNNGG	3 cut(s)	127, 212, 480
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
AlwI	GGATC	3 cut(s)	465, 501, 514
Ama87I	CYCGRG	2 cut(s)	120, 162
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	3 cut(s)	167, 317, 350
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	215, 574
AsuC2I	CCSGG	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	35
AvaI	CYCGRG	2 cut(s)	120, 162
AvaII	GGWCC	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	179, 329, 362
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciT130I	CCWGG	1 cut(s)	273
BciVI	GTATCC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	73
BfaI	CTAG	2 cut(s)	15, 36
BfoI	RGCGCY	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	168, 318, 351
BlsI	GCNGC	3 cut(s)	169, 319, 352
Bme1390I	CCNGG	2 cut(s)	73, 273
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	2 cut(s)	120, 162
BmgT120I	GGNCC	2 cut(s)	215, 574
BmiI	GGNNCC	3 cut(s)	61, 285, 508
BmrFI	CCNGG	2 cut(s)	73, 273
BmsI	GCATC	3 cut(s)	241, 343, 360
BmtI	GCTAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	55, 287, 479, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 212, 480
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	4 cut(s)	55, 287, 479, 510
BseGI	GGATG	4 cut(s)	5, 51, 220, 334
BseLI	CCNNNNNNNGG	3 cut(s)	127, 212, 480
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	179, 329, 362
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	59
BsiHKCI	CYCGRG	2 cut(s)	120, 162
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	127, 212, 480
BsnI	GGCC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	120, 162
Bsp143I	GATC	3 cut(s)	470, 506, 589
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	61, 285, 508
BspOI	GCTAGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	465, 501, 514
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	4 cut(s)	55, 287, 479, 510
BssMI	GATC	3 cut(s)	470, 506, 589
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	55, 510
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	37, 307, 360
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	5, 51, 220, 334
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	473, 509, 592
BstMBI	GATC	3 cut(s)	470, 506, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 251, 359
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	71, 271
BstSNI	TACGTA	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	179, 329, 362
BstX2I	RGATCY	2 cut(s)	470, 506
BstYI	RGATCY	2 cut(s)	470, 506
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	5, 51, 220, 334
BtsIMutI	CAGTG	2 cut(s)	142, 405
Cac8I	GCNNGC	3 cut(s)	37, 307, 360
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	215, 574
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	67, 184, 263
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	64, 207, 246, 380, 393
CviJI	RGCY	6 cut(s)	216, 286, 305, 362, 397, 426
CviKI_1	RGCY	6 cut(s)	216, 286, 305, 362, 397, 426
CviQI	GTAC	3 cut(s)	67, 184, 263
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	3 cut(s)	472, 508, 591
DpnII	GATC	3 cut(s)	470, 506, 589
DraIII	CACNNNGTG	1 cut(s)	275
Eco105I	TACGTA	1 cut(s)	542
Eco130I	CCWWGG	2 cut(s)	55, 510
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	474, 482
Eco88I	CYCGRG	2 cut(s)	120, 162
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	55, 510
EcoT22I	ATGCAT	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	55, 510
FaeI	CATG	5 cut(s)	67, 210, 249, 383, 396
FaiI	YATR	9 cut(s)	65, 117, 208, 247, 348, 381, 394, 539, 588
FatI	CATG	5 cut(s)	63, 206, 245, 379, 392
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	168, 318, 351
FokI	GGATG	3 cut(s)	38, 207, 321
Fsp4HI	GCNGC	3 cut(s)	168, 318, 351
FspBI	CTAG	2 cut(s)	15, 36
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	168, 318, 351
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	67, 210, 249, 383, 396
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	22, 263, 403
Hpy188I	TCNGA	4 cut(s)	177, 463, 501, 529
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	3 cut(s)	22, 263, 403
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	274, 506
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	7 cut(s)	254, 317, 334, 350, 373, 386, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 251, 359
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	541
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	67, 210, 249, 383, 396
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
Kzo9I	GATC	3 cut(s)	470, 506, 589
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	85, 258, 285, 344, 383, 393, 402
Lsp1109I	GCAGC	3 cut(s)	179, 329, 362
LweI	GCATC	3 cut(s)	241, 343, 360
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	2 cut(s)	15, 36
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	100, 137
MalI	GATC	3 cut(s)	472, 508, 591
MboI	GATC	3 cut(s)	470, 506, 589
MboII	GAAGA	3 cut(s)	94, 379, 467
MflI	RGATCY	2 cut(s)	470, 506
MluCI	AATT	2 cut(s)	157, 596
Mly113I	GGCGCC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	19, 118, 228, 474, 480
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	2 cut(s)	326, 601
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	73, 273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	68, 251, 359
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	470, 506, 589
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	67, 210, 249, 383, 396
NlaIV	GGNNCC	3 cut(s)	61, 285, 508
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	100, 137
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	169, 319, 352
PluTI	GGCGCC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	61, 285, 508
PspPI	GGNCC	2 cut(s)	215, 574
PsuI	RGATCY	2 cut(s)	470, 506
RsaI	GTAC	3 cut(s)	68, 185, 264
RsaNI	GTAC	3 cut(s)	67, 184, 263
SaqAI	TTAA	2 cut(s)	326, 601
SatI	GCNGC	3 cut(s)	168, 318, 351
Sau3AI	GATC	3 cut(s)	470, 506, 589
Sau96I	GGNCC	2 cut(s)	215, 574
ScrFI	CCNGG	2 cut(s)	73, 273
SetI	ASST	6 cut(s)	33, 129, 274, 428, 485, 544
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	3 cut(s)	241, 343, 360
SfoI	GGCGCC	1 cut(s)	61
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	162, 466
SmoI	CTYRAG	2 cut(s)	162, 466
SnaBI	TACGTA	1 cut(s)	542
Sse9I	AATT	2 cut(s)	157, 596
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	15, 36
StyD4I	CCNGG	2 cut(s)	71, 271
StyI	CCWWGG	2 cut(s)	55, 510
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	108, 163
TasI	AATT	2 cut(s)	157, 596
TatI	WGTACW	2 cut(s)	183, 262
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	326, 601
Tru9I	TTAA	2 cut(s)	326, 601
TscAI	CASTG	2 cut(s)	142, 412
TseFI	GTSAC	2 cut(s)	100, 137
TseI	GCWGC	3 cut(s)	167, 317, 350
Tsp45I	GTSAC	2 cut(s)	100, 137
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	142, 412
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	2 cut(s)	15, 36
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.