Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

48563684 .. 48570248

Gene Structure 6565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1391200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGCTCAGAATAATAGGGCAGAAAATGGAGTGTTTAGCTATTCAAGGACTGGAAGTATGGGACGCCATGGACTGCCGAAAATCCAAACCCAGCATGAGAAGACCGCGTCGGAGGTTTGCCACGACGACAGCACAATACCGGTGAAGGCCAAGACGATCGACGAGATTCACTCTCTTCAGAAGAAGAAGTCGCAGCCTACCACGCCCATCACCGGATCGCAGGGGGCTTTTGCCGCCACCATGTCTGAAGAGGATCGCCACAAGCAGCAGCTCCAGTCCATCAGACGGGACCCCTCATTGGCGTCGCTGACGAGGGAGACGGGACCCAAAGTGGTGAAGGGGGACCCTGCCAGGAAGTCAGATGGGCAGAAGGCGACGCATGTTGAGCATCATCTTTACGACCCTTCTCTCTTTGGCGTCAGTGATAGTGCCCTCAAGTTTACTCATATCCTCTACAATCTCTCTCCTGCTACAGAACTGTATGAGCAAGCTATAAAGTATGAGAAAGGTTCGTTTGTAACAGCATCGGGTGCGTTGGCCACATTATCTGGGGCAAAAACTGGCCGTTCTCCGAGAGACAAACGAGTCGTCAAAGATGAAGAAACTGAAAACGAGCTTTGGTGGGGAAAGGGCTCACCCAACATTGAAATGGACGAGCATACTTTCTTAGTGAACAGAGAAAGAGCTGTAGATTACTTGATTCCTTGGACAAGCTTGTTTGTTTACTTTCAAATTTTGGTTTTTGTGAATGATCAGTTTCTTAACTGGGATCCAGAACACCGAATCAAAGTTCGGATTGTATCTGCCAGAGCTTACCACTCCTTGTTTATGCATAACATGTGCATCCGCCCAACTCCTGAAGAGCTGGAGGATTTCGGTACTCCAGACTTCACAATATACAATGCCGGGCAGTTTCCATGTAACCGTTACACTCACTACATGACATCCTCTACAAGCGTAGACCTCAATCTCTCTAGGAGGGAAATGGTCATCCTTGGAACCCAGTATGCTGGGGAAATGAAGAAAGGCCTGTTCAGTGTCATGCACTATCTCATGCCTAAGCGTCAAATTCTCTCCCTCCACTCTGGATGCAATATGGGGAAAGACGGCGATGTTGCCCTTTTCTTTGGCTTATCTGGCACTGGGAAGACGACTCTGTCTACGGATCATAATCGGTATCTAATTGGAGATGATGAGCACTGCTGGAGCAACAATGGGGTGTCAAACATTGAAGGTGGTTGCTATGCCAAGTGCATTGATTTGTCAAGGGGCAAGGAACCAGATATTTGGAATGCTATCAAATTTGGGACTGTTTTGGAGAATGTTGTGCTCGATGACCATAATCGAGAAGTTGATTACTCAGAGAAATCTGTTACTGAAAACACCCGGGCAGCATATCCGATAGAGTATATACCGAATGCTAAAATACCGTGTGTTGGTCCCCATCCGAAAAATGTCATTCTCCTGGCATGTGATGCATTTGGTGTGCTTCCACCAGTGAGCAAGCTGAGCTTGGCTCAAACTATGTATCATTTCATCAGCGGTTACACTGCTTTGGTAGCTGGAACAGAAGATGCTATTAAGGAGCCACAAGCTACATTCTCAGCATGCTTCGGTGCAGCGTTTATAATGATGCATCCGACAAGGTATGCAGCAATGTTGGCTGAAAAGATGCAGAAGCACGGGGCCACAGGGTGGCTTGTTAACACAGGCTGGTCTGCAGGAAGGTACGGAACAGGTAACCGTATCAAATTAGCTTACACCAGGAAGATTATCAATGCAATCCACTCAGGGGCCCTTTTGAATGCAACCTACACAAAGACTGAAATATTCGGTCTTGAGATTCCTGCTGATATTGAGGGTGTACCTTCAGAAATTCTGGACCCAATAAACACCTGGTCAGACAAGAAAACCTACAAAGACACACTACTTCATCTGGGTGGTCTGTTCAAGAAGAACATTGAGGTGTTCACAAATCAAAAGATCGGAAAGGATAACAAGCTGACGGATGAAATTCTTGCAGCGGGTCCAAATTTTTTATCAGGAAGCTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

686

Amino Acids

76.23

Weight (kDa)

6.8

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	149 - 625	1e-204	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1628
AasI	GACNNNNNNGTC	2 cut(s)	584, 1156
AccB7I	CCANNNNNTGG	1 cut(s)	1695
AccI	GTMKAC	2 cut(s)	960, 1160
AccII	CGCG	1 cut(s)	107
AciI	CCGC	5 cut(s)	105, 234, 847, 1542, 2024
AclWI	GGATC	5 cut(s)	223, 261, 764, 777, 1173
AcoI	YGGCCR	2 cut(s)	537, 562
AcsI	RAATTY	6 cut(s)	732, 1068, 1301, 1875, 2013, 2032
AcuI	CTGAAG	4 cut(s)	161, 267, 879, 1854
AcyI	GRCGYC	3 cut(s)	64, 302, 417
AdeI	CACNNNGTG	1 cut(s)	1695
AfaI	GTAC	3 cut(s)	880, 1730, 1866
AfiI	CCNNNNNNNGG	6 cut(s)	212, 285, 298, 1436, 1695, 1792
AflIII	ACRYGT	1 cut(s)	837
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	6 cut(s)	45, 647, 731, 1232, 1804, 1951
AjnI	CCWGG	4 cut(s)	350, 1464, 1763, 1895
Alw21I	GWGCWC	2 cut(s)	1200, 1332
Alw26I	GTCTC	2 cut(s)	311, 570
AlwI	GGATC	5 cut(s)	223, 261, 764, 777, 1173
Ama87I	CYCGRG	1 cut(s)	1386
AoxI	GGCC	6 cut(s)	147, 537, 562, 1027, 1686, 1794
ApaI	GGGCCC	1 cut(s)	1798
ApeKI	GCWGC	7 cut(s)	193, 265, 268, 1391, 1619, 1652, 2021
ApoI	RAATTY	6 cut(s)	732, 1068, 1301, 1875, 2013, 2032
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AsiGI	ACCGGT	1 cut(s)	139
AspS9I	GGNCC	9 cut(s)	289, 323, 343, 1439, 1686, 1794, 1795, 1882, 2027
AsuC2I	CCSGG	3 cut(s)	907, 1387, 1388
AsuHPI	GGTGA	4 cut(s)	154, 202, 346, 627
AvaI	CYCGRG	1 cut(s)	1386
AvaII	GGWCC	6 cut(s)	289, 323, 343, 1439, 1882, 2027
BaeGI	GKGCMC	2 cut(s)	433, 1798
BalI	TGGCCA	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	769
BanII	GRGCYC	2 cut(s)	635, 1798
BbsI	GAAGAC	2 cut(s)	107, 1154
Bbv12I	GWGCWC	2 cut(s)	1200, 1332
BbvI	GCAGC	7 cut(s)	205, 277, 280, 1403, 1631, 1664, 2033
BccI	CCATC	4 cut(s)	215, 287, 356, 1452
BceAI	ACGGC	2 cut(s)	549, 1123
BciT130I	CCWGG	4 cut(s)	352, 1466, 1765, 1897
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	3 cut(s)	907, 1387, 1388
BcoDI	GTCTC	2 cut(s)	311, 570
BfaI	CTAG	1 cut(s)	975
BfmI	CTRYAG	3 cut(s)	471, 687, 1719
BisI	GCNGC	8 cut(s)	194, 234, 266, 269, 1392, 1620, 1653, 2022
BlpI	GCTNAGC	1 cut(s)	1508
BlsI	GCNGC	8 cut(s)	195, 235, 267, 270, 1393, 1621, 1654, 2023
Bme1390I	CCNGG	7 cut(s)	352, 907, 1387, 1388, 1466, 1765, 1897
Bme18I	GGWCC	6 cut(s)	289, 323, 343, 1439, 1882, 2027
BmeT110I	CYCGRG	1 cut(s)	1386
BmgT120I	GGNCC	9 cut(s)	289, 323, 343, 1439, 1686, 1794, 1795, 1882, 2027
BmrFI	CCNGG	7 cut(s)	352, 907, 1387, 1388, 1466, 1765, 1897
BmrI	ACTGGG	3 cut(s)	775, 997, 1152
BmsI	GCATC	9 cut(s)	397, 533, 852, 1079, 1465, 1564, 1623, 1645, 1662
BmuI	ACTGGG	3 cut(s)	775, 997, 1152
BpiI	GAAGAC	2 cut(s)	107, 1154
BplI	GAGNNNNNCTC	4 cut(s)	155, 187, 1501, 1533
BpmI	CTGGAG	4 cut(s)	257, 867, 887, 1225
Bpu10I	CCTNAGC	1 cut(s)	1059
Bpu1102I	GCTNAGC	1 cut(s)	1508
BpuEI	CTTGAG	2 cut(s)	419, 1859
BpuMI	CCSGG	3 cut(s)	907, 1387, 1388
BsaBI	GATNNNNATC	1 cut(s)	1170
BsaHI	GRCGYC	3 cut(s)	64, 302, 417
BsaJI	CCNNGG	4 cut(s)	67, 704, 994, 1386
BsaWI	WCCGGW	2 cut(s)	139, 212
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 285, 298, 1436, 1695, 1792
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	7 cut(s)	55, 274, 565, 770, 1003, 1147, 1496
Bse3DI	GCAATG	1 cut(s)	1662
Bse8I	GATNNNNATC	1 cut(s)	1170
BseBI	CCWGG	4 cut(s)	352, 1466, 1765, 1897
BseDI	CCNNGG	4 cut(s)	67, 704, 994, 1386
BseGI	GGATG	7 cut(s)	843, 944, 990, 1094, 1444, 1636, 2014
BseJI	GATNNNNATC	1 cut(s)	1170
BseLI	CCNNNNNNNGG	6 cut(s)	212, 285, 298, 1436, 1695, 1792
BseMI	GCAATG	1 cut(s)	1662
BseMII	CTCAG	5 cut(s)	20, 1374, 1499, 1617, 1803
BseNI	ACTGG	7 cut(s)	55, 274, 565, 770, 1003, 1147, 1496
BseSI	GKGCMC	2 cut(s)	433, 1798
BseXI	GCAGC	7 cut(s)	205, 277, 280, 1403, 1631, 1664, 2033
BseYI	CCCAGC	2 cut(s)	90, 1010
BsgI	GTGCAG	1 cut(s)	1638
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	6 cut(s)	149, 539, 564, 1029, 1688, 1796
BshTI	ACCGGT	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	1200, 1332
BsiHKCI	CYCGRG	1 cut(s)	1386
BsiSI	CCGG	4 cut(s)	140, 213, 906, 1387
BslFI	GGGAC	6 cut(s)	75, 302, 336, 356, 1321, 1425
BslI	CCNNNNNNNGG	6 cut(s)	212, 285, 298, 1436, 1695, 1792
BsmAI	GTCTC	2 cut(s)	311, 570
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	6 cut(s)	75, 302, 336, 356, 1321, 1425
BsmI	GAATGC	3 cut(s)	1297, 1423, 1810
BsnI	GGCC	6 cut(s)	149, 539, 564, 1029, 1688, 1796
BsoBI	CYCGRG	1 cut(s)	1386
Bsp120I	GGGCCC	1 cut(s)	1794
Bsp1286I	GDGCHC	5 cut(s)	433, 635, 1200, 1332, 1798
Bsp143I	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
Bsp1720I	GCTNAGC	1 cut(s)	1508
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	5 cut(s)	105, 234, 847, 1542, 2024
BspANI	GGCC	6 cut(s)	149, 539, 564, 1029, 1688, 1796
BspCNI	CTCAG	5 cut(s)	19, 1373, 1500, 1616, 1802
BspFNI	CGCG	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	1723
BspPI	GGATC	5 cut(s)	223, 261, 764, 777, 1173
BspQI	GCTCTTC	1 cut(s)	855
BsrDI	GCAATG	1 cut(s)	1662
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	7 cut(s)	55, 274, 565, 770, 1003, 1147, 1496
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	4 cut(s)	67, 704, 994, 1386
BssMI	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
BssNI	GRCGYC	3 cut(s)	64, 302, 417
BssT1I	CCWWGG	3 cut(s)	67, 704, 994
Bst2UI	CCWGG	4 cut(s)	352, 1466, 1765, 1897
Bst4CI	ACNGT	5 cut(s)	480, 926, 1312, 1431, 1745
Bst6I	CTCTTC	3 cut(s)	180, 243, 855
BstACI	GRCGYC	3 cut(s)	64, 302, 417
BstAPI	GCANNNNNTGC	2 cut(s)	530, 1475
BstC8I	GCNNGC	3 cut(s)	489, 1505, 1609
BstDEI	CTNAG	7 cut(s)	6, 667, 1059, 1360, 1508, 1603, 1789
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	1739
BstF5I	GGATG	7 cut(s)	843, 944, 990, 1094, 1444, 1636, 2014
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	7 cut(s)	159, 218, 256, 754, 772, 1168, 1986
BstMAI	GTCTC	2 cut(s)	311, 570
BstMBI	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	9 cut(s)	202, 233, 385, 530, 1137, 1475, 1509, 1559, 1661
BstNI	CCWGG	4 cut(s)	352, 1466, 1765, 1897
BstNSI	RCATGY	4 cut(s)	383, 841, 1473, 1611
BstPI	GGTNACC	1 cut(s)	1739
BstSCI	CCNGG	7 cut(s)	350, 905, 1385, 1386, 1464, 1763, 1895
BstSFI	CTRYAG	3 cut(s)	471, 687, 1719
BstSLI	GKGCMC	2 cut(s)	433, 1798
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	7 cut(s)	205, 277, 280, 1403, 1631, 1664, 2033
BstV2I	GAAGAC	2 cut(s)	107, 1154
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	2 cut(s)	1010, 1287
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	6 cut(s)	149, 539, 564, 1029, 1688, 1796
BtgI	CCRYGG	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	1125
BtsCI	GGATG	7 cut(s)	843, 944, 990, 1094, 1444, 1636, 2014
BtsI	GCAGTG	2 cut(s)	1198, 1548
BtsIMutI	CAGTG	6 cut(s)	427, 1042, 1140, 1198, 1503, 1548
Cac8I	GCNNGC	3 cut(s)	489, 1505, 1609
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	9 cut(s)	289, 323, 343, 1439, 1686, 1794, 1795, 1882, 2027
Cfr9I	CCCGGG	1 cut(s)	1386
CseI	GACGC	6 cut(s)	72, 96, 291, 385, 406, 1052
CsiI	ACCWGGT	1 cut(s)	1895
Csp6I	GTAC	3 cut(s)	879, 1729, 1865
CspAI	ACCGGT	1 cut(s)	139
CviQI	GTAC	3 cut(s)	879, 1729, 1865
DdeI	CTNAG	7 cut(s)	6, 667, 1059, 1360, 1508, 1603, 1789
DpnI	GATC	7 cut(s)	158, 217, 255, 753, 771, 1167, 1985
DpnII	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
DraIII	CACNNNGTG	1 cut(s)	1695
DrdI	GACNNNNNNGTC	2 cut(s)	584, 1156
DseDI	GACNNNNNNGTC	2 cut(s)	584, 1156
EaeI	YGGCCR	2 cut(s)	537, 562
Eam1104I	CTCTTC	3 cut(s)	180, 243, 855
EarI	CTCTTC	3 cut(s)	180, 243, 855
EciI	GGCGGA	1 cut(s)	836
Eco130I	CCWWGG	3 cut(s)	67, 704, 994
Eco147I	AGGCCT	1 cut(s)	1029
Eco24I	GRGCYC	2 cut(s)	635, 1798
Eco47I	GGWCC	6 cut(s)	289, 323, 343, 1439, 1882, 2027
Eco57I	CTGAAG	4 cut(s)	161, 267, 879, 1854
Eco88I	CYCGRG	1 cut(s)	1386
Eco91I	GGTNACC	1 cut(s)	1739
EcoO109I	RGGNCCY	5 cut(s)	289, 323, 343, 1794, 1795
EcoO65I	GGTNACC	1 cut(s)	1739
EcoRII	CCWGG	4 cut(s)	350, 1464, 1763, 1895
EcoT14I	CCWWGG	3 cut(s)	67, 704, 994
EcoT22I	ATGCAT	3 cut(s)	834, 1480, 1638
EcoT38I	GRGCYC	2 cut(s)	635, 1798
ErhI	CCWWGG	3 cut(s)	67, 704, 994
Esp3I	CGTCTC	1 cut(s)	311
FalI	AAGNNNNNCTT	2 cut(s)	1496, 1528
FaqI	GGGAC	6 cut(s)	75, 302, 336, 356, 1321, 1425
FauI	CCCGC	1 cut(s)	2017
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	2 cut(s)	960, 1160
Fnu4HI	GCNGC	8 cut(s)	194, 234, 266, 269, 1392, 1620, 1653, 2022
FokI	GGATG	7 cut(s)	830, 931, 977, 1101, 1431, 1623, 2021
FriOI	GRGCYC	2 cut(s)	635, 1798
Fsp4HI	GCNGC	8 cut(s)	194, 234, 266, 269, 1392, 1620, 1653, 2022
FspBI	CTAG	1 cut(s)	975
GluI	GCNGC	8 cut(s)	194, 234, 266, 269, 1392, 1620, 1653, 2022
GsaI	CCCAGC	2 cut(s)	94, 1014
GsuI	CTGGAG	4 cut(s)	257, 867, 887, 1225
HaeIII	GGCC	6 cut(s)	149, 539, 564, 1029, 1688, 1796
HapII	CCGG	4 cut(s)	140, 213, 906, 1387
HgaI	GACGC	6 cut(s)	72, 96, 291, 385, 406, 1052
Hin1I	GRCGYC	3 cut(s)	64, 302, 417
HincII	GTYRAC	1 cut(s)	1705
HindII	GTYRAC	1 cut(s)	1705
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	6 cut(s)	166, 585, 700, 783, 1153, 1843
HpaI	GTTAAC	1 cut(s)	1705
HpaII	CCGG	4 cut(s)	140, 213, 906, 1387
HphI	GGTGA	4 cut(s)	154, 202, 346, 627
Hpy166II	GTNNAC	8 cut(s)	441, 673, 724, 961, 1161, 1705, 1865, 1971
Hpy188III	TCNNGA	9 cut(s)	773, 857, 884, 1086, 1346, 1838, 1880, 1951, 2043
Hpy8I	GTNNAC	8 cut(s)	441, 673, 724, 961, 1161, 1705, 1865, 1971
Hpy99I	CGWCG	5 cut(s)	112, 128, 164, 307, 379
HpyAV	CCTTC	7 cut(s)	139, 331, 364, 414, 1226, 1719, 1878
HpyCH4III	ACNGT	5 cut(s)	480, 926, 1312, 1431, 1745
HpyF10VI	GCNNNNNNNGC	9 cut(s)	202, 233, 385, 530, 1137, 1475, 1509, 1559, 1661
HpyF3I	CTNAG	7 cut(s)	6, 667, 1059, 1360, 1508, 1603, 1789
Hsp92I	GRCGYC	3 cut(s)	64, 302, 417
KflI	GGGWCCC	3 cut(s)	289, 323, 343
Ksp22I	TGATCA	1 cut(s)	751
KspAI	GTTAAC	1 cut(s)	1705
Kzo9I	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
LguI	GCTCTTC	1 cut(s)	855
LmnI	GCTCC	3 cut(s)	276, 1206, 1585
Lsp1109I	GCAGC	7 cut(s)	205, 277, 280, 1403, 1631, 1664, 2033
LweI	GCATC	9 cut(s)	397, 533, 852, 1079, 1465, 1564, 1623, 1645, 1662
MabI	ACCWGGT	1 cut(s)	1895
MaeI	CTAG	1 cut(s)	975
MaeIII	GTNAC	6 cut(s)	517, 920, 926, 1372, 1544, 1739
MalI	GATC	7 cut(s)	158, 217, 255, 753, 771, 1167, 1985
MboI	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	5 cut(s)	433, 635, 1200, 1332, 1798
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	8 cut(s)	732, 1068, 1182, 1301, 1751, 1875, 2013, 2032
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	594, 1147
MmeI	TCCRAC	2 cut(s)	90, 1664
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	3 cut(s)	834, 1480, 1638
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	3 cut(s)	762, 1581, 1704
MslI	CAYNNNNRTG	3 cut(s)	647, 1938, 1964
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	2 cut(s)	1542, 2024
MspI	CCGG	4 cut(s)	140, 213, 906, 1387
MspR9I	CCNGG	7 cut(s)	352, 907, 1387, 1388, 1466, 1765, 1897
Mva1269I	GAATGC	3 cut(s)	1297, 1423, 1810
MvaI	CCWGG	4 cut(s)	352, 1466, 1765, 1897
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	9 cut(s)	202, 233, 385, 530, 1137, 1475, 1509, 1559, 1661
NciI	CCSGG	3 cut(s)	907, 1387, 1388
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
NsiI	ATGCAT	3 cut(s)	834, 1480, 1638
NspI	RCATGY	4 cut(s)	383, 841, 1473, 1611
PaeI	GCATGC	1 cut(s)	1611
PceI	AGGCCT	1 cut(s)	1029
PciI	ACATGT	1 cut(s)	837
PciSI	GCTCTTC	1 cut(s)	855
PctI	GAATGC	3 cut(s)	1297, 1423, 1810
PfeI	GAWTC	4 cut(s)	166, 700, 783, 1843
PflFI	GACNNNGTC	2 cut(s)	106, 1156
PflMI	CCANNNNNTGG	1 cut(s)	1695
PinAI	ACCGGT	1 cut(s)	139
PkrI	GCNGC	8 cut(s)	195, 235, 267, 270, 1393, 1621, 1654, 2023
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	2 cut(s)	593, 1147
PpsI	GAGTC	2 cut(s)	593, 1147
PpuMI	RGGWCCY	3 cut(s)	289, 323, 343
PscI	ACATGT	1 cut(s)	837
PsiI	TTATAA	1 cut(s)	1628
Psp5II	RGGWCCY	3 cut(s)	289, 323, 343
Psp6I	CCWGG	4 cut(s)	350, 1464, 1763, 1895
PspEI	GGTNACC	1 cut(s)	1739
PspFI	CCCAGC	2 cut(s)	90, 1010
PspGI	CCWGG	4 cut(s)	350, 1464, 1763, 1895
PspOMI	GGGCCC	1 cut(s)	1794
PspPI	GGNCC	9 cut(s)	289, 323, 343, 1439, 1686, 1794, 1795, 1882, 2027
PspPPI	RGGWCCY	3 cut(s)	289, 323, 343
PstI	CTGCAG	1 cut(s)	1723
PsuI	RGATCY	1 cut(s)	769
PsyI	GACNNNGTC	2 cut(s)	106, 1156
PvuI	CGATCG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	880, 1730, 1866
RsaNI	GTAC	3 cut(s)	879, 1729, 1865
RseI	CAYNNNNRTG	3 cut(s)	647, 1938, 1964
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	3 cut(s)	762, 1581, 1704
SatI	GCNGC	8 cut(s)	194, 234, 266, 269, 1392, 1620, 1653, 2022
Sau3AI	GATC	7 cut(s)	156, 215, 253, 751, 769, 1165, 1983
Sau96I	GGNCC	9 cut(s)	289, 323, 343, 1439, 1686, 1794, 1795, 1882, 2027
SchI	GAGTC	2 cut(s)	594, 1147
ScrFI	CCNGG	7 cut(s)	352, 907, 1387, 1388, 1466, 1765, 1897
SduI	GDGCHC	5 cut(s)	433, 635, 1200, 1332, 1798
SexAI	ACCWGGT	1 cut(s)	1895
SfaNI	GCATC	9 cut(s)	397, 533, 852, 1079, 1465, 1564, 1623, 1645, 1662
SfcI	CTRYAG	3 cut(s)	471, 687, 1719
SinI	GGWCC	6 cut(s)	289, 323, 343, 1439, 1882, 2027
SmaI	CCCGGG	1 cut(s)	1388
SmiMI	CAYNNNNRTG	3 cut(s)	647, 1938, 1964
SmlI	CTYRAG	2 cut(s)	434, 1838
SmoI	CTYRAG	2 cut(s)	434, 1838
SphI	GCATGC	1 cut(s)	1611
Sse9I	AATT	8 cut(s)	732, 1068, 1182, 1301, 1751, 1875, 2013, 2032
SseBI	AGGCCT	1 cut(s)	1029
SsiI	CCGC	5 cut(s)	105, 234, 847, 1542, 2024
SspI	AATATT	1 cut(s)	1830
SspMI	CTAG	1 cut(s)	975
StuI	AGGCCT	1 cut(s)	1029
StyD4I	CCNGG	7 cut(s)	350, 905, 1385, 1386, 1464, 1763, 1895
StyI	CCWWGG	3 cut(s)	67, 704, 994
TaaI	ACNGT	5 cut(s)	480, 926, 1312, 1431, 1745
TaqI	TCGA	3 cut(s)	159, 1332, 1345
TaqII	GACCGA	1 cut(s)	1823
TasI	AATT	8 cut(s)	732, 1068, 1182, 1301, 1751, 1875, 2013, 2032
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	166, 700, 783, 1843
Tru1I	TTAA	3 cut(s)	762, 1581, 1704
Tru9I	TTAA	3 cut(s)	762, 1581, 1704
TscAI	CASTG	6 cut(s)	427, 1042, 1147, 1205, 1503, 1555
TseI	GCWGC	7 cut(s)	193, 265, 268, 1391, 1619, 1652, 2021
TspDTI	ATGAA	5 cut(s)	612, 1034, 1525, 1922, 2025
TspGWI	ACGGA	3 cut(s)	1178, 1746, 2021
TspMI	CCCGGG	1 cut(s)	1386
TspRI	CASTG	6 cut(s)	427, 1042, 1147, 1205, 1503, 1555
Tth111I	GACNNNGTC	2 cut(s)	106, 1156
Van91I	CCANNNNNTGG	1 cut(s)	1695
VpaK11BI	GGWCC	6 cut(s)	289, 323, 343, 1439, 1882, 2027
XapI	RAATTY	6 cut(s)	732, 1068, 1301, 1875, 2013, 2032
XceI	RCATGY	4 cut(s)	383, 841, 1473, 1611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	646, 1893
XmaI	CCCGGG	1 cut(s)	1386
XmiI	GTMKAC	2 cut(s)	960, 1160
XspI	CTAG	1 cut(s)	975
Zsp2I	ATGCAT	3 cut(s)	834, 1480, 1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.