RLG00000030261

Phosphoenolpyruvate carboxykinase ATP

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
58544872 .. 58547216
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030261

Sequence Viewer

Length: 870 bp
ATGCAAGTAGTAACAAAGAAACAAGATCATGAACAGAGCTATGGTATGAATGTGGTGCAGAGCTATATGAGCAGGCTCTACAGCACGAGAAAGGTCCTTCATCACTTGCAGTGGCGCATTGGCAACTCTTTCTGGAGCCAAAATAGGTGCATCCGACTTACTCCTGAAGAGTTGGAGAATTTCGGTACTCCAGACTTCACTATATACAATGCCGGTCAGTTCCCGTGTAATCGTTACACTCATTACATGACATCCTCTACTAGCGTAGACATCAACCTTGCTAGGAAGGAAATGGTCATCCTTGGCTCCATGTATTGCATTGATCTCTCCAGGGAGAAAGAGCGCGACATCTGGAATGCCATCAAGTTTGGCTCTGTGGTAGAAAATGTCACATTCGACGAGCATACCCGAGAGGTGGATTACAGTGACAAATCTATTACAGAGAATTCTCGAGCAGCGTATCCCATTGAGTACATTCCCAATGCAAAGATACCATTTGTTGGCCCTCATCCAAAGAATGTGATACTTTTGGCATGTGATGCATTTGTTGTACTCCCACCTGAGCCACGGGCAACATTCTCAGCTTGCTCTGGTGCAGCATTTTTAATGTTGCATCCTACCAAGTATGCAGCAATGTTGGCTGAGAAGATGCAGAAGCATGGTGCAACTGCATGGCTGGTCAACACTGGTTGGTCTGGTGGAAGCCTATTGAAAGCAGACTACAAGAAAACTGAAGATTCAGACTTGAGATCCCCACCGAGGTTGAGGGAGTGCCTTCAGAATGGATCCAAGGAACTCTATCAATCTGATTTCTCTATACCTATTTCCCTCATCTATTACAGATTAGTCTTGGTCCAACTTCTGATATGA

Protein Analysis

290

Amino Acids

33.08

Weight (kDa)

8.13

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPCK_ATP PF01293 12 - 105 3.7e-11 Phosphoenolpyruvate carboxykinase
PEPCK_ATP PF01293 106 - 187 1.4e-31 Phosphoenolpyruvate carboxykinase
PEPCK_ATP PF01293 188 - 236 1.8e-19 Phosphoenolpyruvate carboxykinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 345
AclWI GGATC 3 cut(s) 744, 780, 793
AcsI RAATTY 2 cut(s) 178, 445
AcuI CTGAAG 3 cut(s) 186, 753, 761
AfaI GTAC 3 cut(s) 187, 473, 552
AfiI CCNNNNNNNGG 3 cut(s) 415, 500, 759
AgsI TTSAA 1 cut(s) 712
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 3 cut(s) 39, 63, 584
AluI AGCT 3 cut(s) 39, 63, 584
AlwI GGATC 3 cut(s) 744, 780, 793
Ama87I CYCGRG 2 cut(s) 408, 450
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 3 cut(s) 455, 596, 629
ApoI RAATTY 2 cut(s) 178, 445
AspLEI GCGC 2 cut(s) 117, 345
AspS9I GGNCC 3 cut(s) 94, 503, 853
AvaI CYCGRG 2 cut(s) 408, 450
AvaII GGWCC 2 cut(s) 94, 853
BamHI GGATCC 1 cut(s) 785
BauI CACGAG 1 cut(s) 85
BbvI GCAGC 3 cut(s) 467, 608, 641
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 331
BciVI GTATCC 1 cut(s) 471
BfaI CTAG 2 cut(s) 261, 282
BfmI CTRYAG 1 cut(s) 79
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 3 cut(s) 456, 597, 630
BlsI GCNGC 3 cut(s) 457, 598, 631
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 2 cut(s) 94, 853
BmeT110I CYCGRG 2 cut(s) 408, 450
BmgT120I GGNCC 3 cut(s) 94, 503, 853
BmiI GGNNCC 3 cut(s) 137, 307, 787
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 4 cut(s) 159, 529, 622, 639
BpmI CTGGAG 3 cut(s) 154, 174, 313
Bpu10I CCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 766
BsaJI CCNNGG 5 cut(s) 301, 330, 566, 758, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 415, 500, 759
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 5 cut(s) 301, 330, 566, 758, 789
BseGI GGATG 5 cut(s) 150, 251, 297, 508, 613
BseLI CCNNNNNNNGG 3 cut(s) 415, 500, 759
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 552, 594, 633
BseNI ACTGG 1 cut(s) 691
BseXI GCAGC 3 cut(s) 467, 608, 641
BsgI GTGCAG 2 cut(s) 77, 615
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 504
BsiHKCI CYCGRG 2 cut(s) 408, 450
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 415, 500, 759
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 1 cut(s) 504
BsoBI CYCGRG 2 cut(s) 408, 450
Bsp143I GATC 4 cut(s) 25, 322, 749, 785
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 3 cut(s) 553, 593, 634
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 137, 307, 787
BspPI GGATC 3 cut(s) 744, 780, 793
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 691
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 5 cut(s) 301, 330, 566, 758, 789
BssMI GATC 4 cut(s) 25, 322, 749, 785
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 2 cut(s) 301, 789
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 74, 586
BstDEI CTNAG 3 cut(s) 561, 580, 642
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 5 cut(s) 150, 251, 297, 508, 613
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 117, 345
BstKTI GATC 4 cut(s) 28, 325, 752, 788
BstMBI GATC 4 cut(s) 25, 322, 749, 785
BstMWI GCNNNNNNNGC 3 cut(s) 69, 539, 638
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 467, 608, 641
BstX2I RGATCY 2 cut(s) 749, 785
BstYI RGATCY 2 cut(s) 749, 785
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 5 cut(s) 150, 251, 297, 508, 613
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 116, 430, 684
Cac8I GCNNGC 2 cut(s) 74, 586
CciI TCATGA 1 cut(s) 28
CfoI GCGC 2 cut(s) 117, 345
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 94, 503, 853
Csp6I GTAC 3 cut(s) 186, 472, 551
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 6 cut(s) 29, 247, 310, 534, 659, 672
CviQI GTAC 3 cut(s) 186, 472, 551
DdeI CTNAG 3 cut(s) 561, 580, 642
DpnI GATC 4 cut(s) 27, 324, 751, 787
DpnII GATC 4 cut(s) 25, 322, 749, 785
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 301, 789
Eco47I GGWCC 2 cut(s) 94, 853
Eco57I CTGAAG 3 cut(s) 186, 753, 761
Eco88I CYCGRG 2 cut(s) 408, 450
EcoO109I RGGNCCY 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 301, 789
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 301, 789
FaeI CATG 6 cut(s) 32, 250, 313, 537, 662, 675
FatI CATG 6 cut(s) 28, 246, 309, 533, 658, 671
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 456, 597, 630
FokI GGATG 5 cut(s) 137, 238, 284, 495, 600
Fsp4HI GCNGC 3 cut(s) 456, 597, 630
FspBI CTAG 2 cut(s) 261, 282
GlaI GCGC 2 cut(s) 116, 344
GluI GCNGC 3 cut(s) 456, 597, 630
GsuI CTGGAG 3 cut(s) 154, 174, 313
HaeIII GGCC 1 cut(s) 504
HapII CCGG 1 cut(s) 213
HhaI GCGC 2 cut(s) 117, 345
Hin1II CATG 6 cut(s) 32, 250, 313, 537, 662, 675
Hin6I GCGC 2 cut(s) 115, 343
HinP1I GCGC 2 cut(s) 115, 343
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 1 cut(s) 737
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 268, 682
Hpy188I TCNGA 5 cut(s) 155, 742, 780, 808, 864
Hpy188III TCNNGA 6 cut(s) 29, 133, 164, 191, 352, 450
Hpy8I GTNNAC 2 cut(s) 268, 682
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 107, 280, 785
HpyCH4III ACNGT 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 539, 638
HpyF3I CTNAG 3 cut(s) 561, 580, 642
Hsp92II CATG 6 cut(s) 32, 250, 313, 537, 662, 675
HspAI GCGC 2 cut(s) 115, 343
Kzo9I GATC 4 cut(s) 25, 322, 749, 785
LmnI GCTCC 2 cut(s) 135, 311
Lsp1109I GCAGC 3 cut(s) 467, 608, 641
LweI GCATC 4 cut(s) 159, 529, 622, 639
MaeI CTAG 2 cut(s) 261, 282
MaeIII GTNAC 4 cut(s) 10, 233, 388, 425
MalI GATC 4 cut(s) 27, 324, 751, 787
MboI GATC 4 cut(s) 25, 322, 749, 785
MboII GAAGA 3 cut(s) 179, 658, 746
MflI RGATCY 2 cut(s) 749, 785
MluCI AATT 2 cut(s) 178, 445
MmeI TCCRAC 2 cut(s) 153, 178
MnlI CCTC 6 cut(s) 265, 406, 516, 753, 759, 839
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 1 cut(s) 605
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 69, 539, 638
NdeII GATC 4 cut(s) 25, 322, 749, 785
NlaIII CATG 6 cut(s) 32, 250, 313, 537, 662, 675
NlaIV GGNNCC 3 cut(s) 137, 307, 787
NmuCI GTSAC 2 cut(s) 388, 425
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 537
PaeR7I CTCGAG 1 cut(s) 450
PagI TCATGA 1 cut(s) 28
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 737
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 3 cut(s) 457, 598, 631
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 137, 307, 787
PspPI GGNCC 3 cut(s) 94, 503, 853
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 2 cut(s) 749, 785
RsaI GTAC 3 cut(s) 187, 473, 552
RsaNI GTAC 3 cut(s) 186, 472, 551
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 3 cut(s) 456, 597, 630
Sau3AI GATC 4 cut(s) 25, 322, 749, 785
Sau96I GGNCC 3 cut(s) 94, 503, 853
ScrFI CCNGG 1 cut(s) 331
SfaNI GCATC 4 cut(s) 159, 529, 622, 639
SfcI CTRYAG 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 94, 853
SlaI CTCGAG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 450, 745
SmoI CTYRAG 2 cut(s) 450, 745
Sse9I AATT 2 cut(s) 178, 445
SspMI CTAG 2 cut(s) 261, 282
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 301, 789
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 396, 451
TasI AATT 2 cut(s) 178, 445
TatI WGTACW 2 cut(s) 471, 550
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 3 cut(s) 116, 430, 691
TseFI GTSAC 2 cut(s) 388, 425
TseI GCWGC 3 cut(s) 455, 596, 629
Tsp45I GTSAC 2 cut(s) 388, 425
TspDTI ATGAA 3 cut(s) 45, 62, 89
TspRI CASTG 3 cut(s) 116, 430, 691
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 94, 853
XapI RAATTY 2 cut(s) 178, 445
XceI RCATGY 1 cut(s) 537
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 261, 282
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.