Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000509.1

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

172116 .. 172690

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000509.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgcagaagcatggtgcaactggatggctggtcaacactggctggtctggcggaaggtatggatcgggaaagcgcattaagctaccctacacccggaaaatcattgatgccatacactctggcggcctcttgaatgcaaattacaagaagattgaagtgtttggacttgagatccccaatgagattgagggagttccttcagaaatactggatccagtgaacactcggtcagacaagaatgcataccaggaaaccctcctgaagttggctggtctatttaagaacaactttgagactttcacaaactacaagattggcaaggacaacaagctgactgaagaaattcttgctgctggtccgaatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

9.13

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 123
AclWI	GGATC	4 cut(s)	70, 166, 206, 219
AcsI	RAATTY	2 cut(s)	342, 361
AcuI	CTGAAG	3 cut(s)	183, 281, 357
AfiI	CCNNNNNNNGG	2 cut(s)	93, 265
AgsI	TTSAA	2 cut(s)	133, 155
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	82, 331
AluI	AGCT	2 cut(s)	82, 331
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	4 cut(s)	70, 166, 206, 219
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	342, 361
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	367
BisI	GCNGC	2 cut(s)	124, 351
BlsI	GCNGC	2 cut(s)	125, 352
Bme1390I	CCNGG	2 cut(s)	94, 248
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	94, 248
BmsI	GCATC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 265
Bse1I	ACTGG	4 cut(s)	25, 43, 213, 215
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	93, 265
BseNI	ACTGG	4 cut(s)	25, 43, 213, 215
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	93, 265
BsmAI	GTCTC	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	139, 244
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	62, 171, 211
BspACI	CCGC	2 cut(s)	51, 123
BspANI	GGCC	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	4 cut(s)	70, 166, 206, 219
BsrI	ACTGG	4 cut(s)	25, 43, 213, 215
BssMI	GATC	3 cut(s)	62, 171, 211
Bst2UI	CCWGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	65, 174, 214
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	3 cut(s)	62, 171, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 79
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	92, 246
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	171, 211
BstYI	RGATCY	2 cut(s)	171, 211
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	36, 222
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	356
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	6 cut(s)	28, 42, 82, 126, 269, 331
CviKI_1	RGCY	6 cut(s)	28, 42, 82, 126, 269, 331
DpnI	GATC	3 cut(s)	64, 173, 213
DpnII	GATC	3 cut(s)	62, 171, 211
EciI	GGCGGA	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	3 cut(s)	183, 281, 357
EcoRII	CCWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 60, 113, 244
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 330, 362
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	124, 351
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	124, 351
FspBI	CTAG	1 cut(s)	367
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	124, 351
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	34, 220
Hpy188I	TCNGA	3 cut(s)	202, 232, 360
Hpy188III	TCNNGA	3 cut(s)	66, 130, 259
Hpy8I	GTNNAC	2 cut(s)	34, 220
HpyAV	CCTTC	2 cut(s)	48, 207
HpyCH4V	TGCA	4 cut(s)	4, 17, 137, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 79
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	62, 171, 211
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	367
MalI	GATC	3 cut(s)	64, 173, 213
MboI	GATC	3 cut(s)	62, 171, 211
MboII	GAAGA	2 cut(s)	160, 350
MflI	RGATCY	2 cut(s)	171, 211
MluCI	AATT	3 cut(s)	139, 342, 361
MnlI	CCTC	3 cut(s)	137, 181, 266
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	78, 279
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	94, 248
Mva1269I	GAATGC	2 cut(s)	139, 244
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	48, 79
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	62, 171, 211
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	244
PctI	GAATGC	2 cut(s)	139, 244
PdmI	GAANNNNTTC	1 cut(s)	342
PkrI	GCNGC	2 cut(s)	125, 352
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	171, 211
SaqAI	TTAA	2 cut(s)	78, 279
SatI	GCNGC	2 cut(s)	124, 351
Sau3AI	GATC	3 cut(s)	62, 171, 211
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	94, 248
SetI	ASST	3 cut(s)	59, 84, 333
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	139, 342, 361
SsiI	CCGC	2 cut(s)	51, 123
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	92, 246
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	139, 342, 361
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	78, 279
Tru9I	TTAA	2 cut(s)	78, 279
TscAI	CASTG	2 cut(s)	43, 222
TseI	GCWGC	1 cut(s)	350
TspRI	CASTG	2 cut(s)	43, 222
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	2 cut(s)	342, 361
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.