Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000550

Physical Location & Seq

Genomic Coordinates Reverse (-)

20867912 .. 20874496

Gene Structure 6585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGCTGACCTACCTCCAAGCTATCCGGAATGTTGCTGCTTCAGATGAAAACCCGGCCTTAGATTTGCAAGAATCCTACCGATATCGAAAACTGCAATTCAAGATCAAAAATTTGATATCAAAATCTCACTCTCATTTGCATGATCGGTCACTCTCTCATTTCCATTTCCCATTAGCTTTTTCATACTCATTTTCGTCTCAAATTCTGTGGATTGAGATGGCGTCTAACGGTGACGGAGATTTCAGCTTCGCGACTGGGAACGGCCCGGCGGCGGTGACGAACGGCAACGGAGCGGCGAGGAACGGGCTGGCGAAGATCCATACGACGCCGAAGAACGGGAATGGGGTGTGCCACGACGACAGCTCGGCGACGGTGAAGGCTCAGACCATCGACCAGCTTCATTCGCTGCAGAAGAAGAAGTCGGCACCGACGACACCCATCAAGGGCACTCAGGGCGCCTTTGCTGTCGCTCTCTCCGAGGAGGAACGCCAGATGCAGCAGCTCCAGTCCATCAGTAACTCTCTGGCGTCGCTGACGAGAGGGACTGGACCAAAGGTTGTGAGAGGAGACCCTGCGCAGCAGTCTCCTCATCATACCCCGAAGGTGTCATCGCACCACCATCATTTCACTCCCACCATCAGCGTCAGTGACAGTGCCCTCAAGTTCACCCATGTCCTCTACAACCTCTCTCCTGCTGAGCTATATGAGCAGGCGATAAATAATGAAAAGGGGTCGTTCGTTACGTCAACAGGCGCATTAGCAACACTTTCTGGAGCCAAGACAGGTCGGTCTCCAAGAGATAAACGCGTCGTCAAGGATGAGACCACAGAAGAGGAGCTTTGGTGGGGAAGGGGTTCACCAAACATTGAAATGGACGAGCACACCTTCATGGTCAACAGGGAAAGAGCTGTGGATTACCTGAATTCTTTGGACAAGGTTTTTGTAAATGACCAATACTTGAACTGGGATCCAGAAAACAGAATCAAAGTGCGGATTGTCTCTGCCAGGGCTTATCATTCTTTGTTCATGCACAACATGTGTATCCGACCCAGTCCTGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACTATTTACAATGCTGGTCAGTTCCCGTGTAATCGTTACACCCACTATATGACATCCTCCACTAGCATAGATCTTAATCTTGGTAGGAGGGAAATGGTCATCCTCGGCACCATGTATGCCGGGGAAATGAAGAAAGGCCTTTTCAGTCTCATGCATTATCTCATGCCTAAGCGACAAATCCTATCCCTACATTCTGGCTGCAATATGGGGAAAGATGGAGATGTTGCACTCTTCTTTGGATTGTCAGGTACTGGGAAGACAACTCTGTCTACTGATCACAATAGATACCTAATTGGAGATGATGAACACTGTTGGACTGAGAATGGTGTATCAAATATCGAAGGTGGTTGCTATGCCAAATGTATTGATCTCTCAAGGGAGAAAGAACCTGACATTTGGAATGCCATCAAGTTTGGTGCTGTGTTGGAAAATGTTGTGTTTGATGAGCATACTCGAGAAGTGGATTATTCTGACAAATCTGTTACAGAGAATACTCGGGCAGCCTACCCCATTGAGTACATTCCCAATGCAAAAATACCGTGTGTTGGCCCTCATCCGAAGAATGTGATACTTTTGGCATGTGATGCATTTGGTGTGCTCCCACCTGTGAGCAAGTTAAACCTGGCACAGACCATGTACCATTTCATCAGTGGCTATACAGCACTGGTTGCTGGAACTGAAGAGGGCATTAAGGAGCCACAGGCAACATTCTCGGCTTGCTTTGGTGCTGCATTTATAATGTTGCATCCAACGAAGTATGCAGCAATGCTTGCTCAGAAAATGCAGCAGCATGGTGCAACTGGATGGCTGGTCAACACTGGCTGGTCTGGTGGAAGGTATGGATCGGGAAAGCGCATTAAGCTACCCTACACCCGGAAAATCATTGATGCCATACACTCTGGCAGCCTCTTGAATGCAAATTACAAGAAGACTGAAGTGTTTGGACTTGAGATCCCCACTGAGATTGAGGGAGTGCCTTCAGAAATACTGGATCCAGTGAACACTTGGTCGGACAAGAATGCATACCAGGAAACACTCCTGAAGTTGGCTGGTCTATTTAAGAACAACTTTGAGACTTTCACAAACTACAAGATTGGCAAGGACAACAAGCTGACTGAAGAAATTCTCGCTGCTGGTCCGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004611 GO:0004612 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006094 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016020 GO:0016036 GO:0016051 GO:0016829 GO:0016830 GO:0016831 GO:0019318 GO:0019319 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0042221 GO:0042594 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046364 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

746

Amino Acids

82.67

Weight (kDa)

6.87

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	224 - 691	9.5e-215	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37870 AT5G65690 AT5G65690 AT5G65690 AT5G65690
fragaria_vesca	FvH4_1g18831 FvH4_1g18850 FvH4_1g18850 FvH4_1g24570 FvH4_4g10540 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_5g33740 FvH4_7g04810
malus_domestica	MD01G1046200.v1.1 MD08G1207000.v1.1 MD15G1391200.v1.1 MD15G1405400.v1.1
prunus_persica	Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.1G541200_v2.0.a1 Prupe.6G210900_v2.0.a1 Prupe.6G211000_v2.0.a1
pyrus_communis	pycom01g07230 pycom08g17910 pycom15g26890 pycom16g22360
rosa_chinensis	RchiOBHm_Chr2g0109711 RchiOBHm_Chr2g0109721 RchiOBHm_Chr5g0054131 RchiOBHm_Chr5g0054141 RchiOBHm_Chr5g0054151 RchiOBHm_Chr7g0233021
rosa_laevigata	RLG00000001305 RLG00000017759 RLG00000017760 RLG00000030254 RLG00000030261 RLG00000030264
rosa_multiflora	Rmu_sc0000507.1_g000005 Rmu_sc0000509.1_g000040 Rmu_sc0002076.1_g000010 Rmu_sc0006889.1_g000016 Rmu_sc0006889.1_g000018 Rmu_ssc0000018.1_g000034
rosa_roxburghii	Rroxscaffold_2G00134000 Rroxscaffold_3G00227740 Rroxscaffold_4G00326310 Rroxscaffold_4G00326340
rosa_rugosa	Rorug02G0162100 Rorug02G0162200 Rorug02G0162300 Rorug07G0277900.1
rosa_samantha	Rh2AG214600 Rh2AG214700 Rh2BG224900 Rh2BG225000 Rh2BG225100 Rh2CG216800 Rh2CG216900 Rh2DG220100 Rh2DG220200 Rh5AG354400 Rh5AG354500 Rh5DG381200 Rh5DG381300 Rh7BG405700 Rh7CG452300 Rh7DG421600
rosa_wichuraiana	Rw0G009650 Rw0G009660 Rw1G004940 Rw1G004970 Rw2G016580 Rw5G033400 Rw7G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1826
AasI	GACNNNNNNGTC	2 cut(s)	787, 1354
Acc16I	TGCGCA	1 cut(s)	576
AccB1I	GGYRCC	3 cut(s)	424, 455, 1196
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	1358
AccII	CGCG	2 cut(s)	251, 807
AccIII	TCCGGA	2 cut(s)	24, 1081
AciI	CCGC	4 cut(s)	269, 272, 293, 991
AclWI	GGATC	7 cut(s)	310, 962, 975, 1939, 2035, 2075, 2088
AcsI	RAATTY	6 cut(s)	109, 201, 922, 1069, 2211, 2230
AcuI	CTGAAG	7 cut(s)	24, 1077, 1788, 2043, 2052, 2150, 2226
AcyI	GRCGYC	4 cut(s)	221, 326, 456, 527
AfaI	GTAC	4 cut(s)	1078, 1339, 1607, 1727
AfiI	CCNNNNNNNGG	6 cut(s)	271, 335, 443, 1634, 1962, 2134
AflIII	ACRYGT	2 cut(s)	805, 1035
AgsI	TTSAA	4 cut(s)	100, 869, 961, 2002
AjnI	CCWGG	3 cut(s)	1004, 1710, 2115
Alw21I	GWGCWC	2 cut(s)	882, 1689
Alw26I	GTCTC	8 cut(s)	201, 561, 588, 795, 815, 1003, 1241, 2156
AlwI	GGATC	7 cut(s)	310, 962, 975, 1939, 2035, 2075, 2088
AlwNI	CAGNNNCTG	1 cut(s)	1340
Ama87I	CYCGRG	2 cut(s)	1542, 1584
Aor13HI	TCCGGA	2 cut(s)	24, 1081
AoxI	GGCC	4 cut(s)	54, 262, 1225, 1636
ApoI	RAATTY	6 cut(s)	109, 201, 922, 1069, 2211, 2230
ArsI	GACNNNNNNTTYG	2 cut(s)	923, 955
Asp700I	GAANNNNTTC	2 cut(s)	853, 2211
AspLEI	GCGC	4 cut(s)	458, 577, 755, 1944
AspS9I	GGNCC	4 cut(s)	263, 548, 1637, 2225
AsuC2I	CCSGG	4 cut(s)	53, 266, 1210, 1963
AsuHPI	GGTGA	5 cut(s)	242, 286, 385, 658, 849
AvaI	CYCGRG	2 cut(s)	1542, 1584
AvaII	GGWCC	2 cut(s)	548, 2225
BaeGI	GKGCMC	2 cut(s)	449, 658
BaeI	ACNNNNGTAYC	2 cut(s)	1024, 1057
BamHI	GGATCC	2 cut(s)	967, 2080
BanI	GGYRCC	3 cut(s)	424, 455, 1196
BbsI	GAAGAC	2 cut(s)	1352, 2024
Bbv12I	GWGCWC	2 cut(s)	882, 1689
BccI	CCATC	9 cut(s)	211, 395, 446, 518, 627, 644, 1298, 1502, 1887
BceAI	ACGGC	2 cut(s)	277, 298
BcgI	CGANNNNNNTGC	2 cut(s)	1782, 1816
BciT130I	CCWGG	3 cut(s)	1006, 1712, 2117
BciVI	GTATCC	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	1363
BcnI	CCSGG	4 cut(s)	53, 266, 1210, 1963
BcoDI	GTCTC	8 cut(s)	201, 561, 588, 795, 815, 1003, 1241, 2156
BfaI	CTAG	2 cut(s)	1152, 2236
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	1052
BglII	AGATCT	1 cut(s)	1159
BlpI	GCTNAGC	1 cut(s)	696
Bme1390I	CCNGG	7 cut(s)	53, 266, 1006, 1210, 1712, 1963, 2117
Bme18I	GGWCC	2 cut(s)	548, 2225
BmeT110I	CYCGRG	2 cut(s)	1542, 1584
BmgT120I	GGNCC	4 cut(s)	263, 548, 1637, 2225
BmiI	GGNNCC	7 cut(s)	426, 457, 775, 969, 1198, 1785, 2082
BmrFI	CCNGG	7 cut(s)	53, 266, 1006, 1210, 1712, 1963, 2117
BmrI	ACTGGG	4 cut(s)	264, 973, 1044, 1350
BmsI	GCATC	4 cut(s)	483, 1663, 1843, 1966
BmuI	ACTGGG	4 cut(s)	264, 973, 1044, 1350
BpiI	GAAGAC	2 cut(s)	1352, 2024
BpmI	CTGGAG	3 cut(s)	488, 792, 1085
Bpu10I	CCTNAGC	1 cut(s)	1257
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	644, 1447, 2057
BpuMI	CCSGG	4 cut(s)	53, 266, 1210, 1963
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaHI	GRCGYC	4 cut(s)	221, 326, 456, 527
BsaI	GGTCTC	3 cut(s)	561, 795, 815
BsaJI	CCNNGG	4 cut(s)	477, 1005, 1192, 1209
BsaWI	WCCGGW	2 cut(s)	24, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	827, 857
Bsc4I	CCNNNNNNNGG	6 cut(s)	271, 335, 443, 1634, 1962, 2134
Bse3DI	GCAATG	1 cut(s)	1860
Bse8I	GATNNNNATC	1 cut(s)	1164
BseAI	TCCGGA	2 cut(s)	24, 1081
BseBI	CCWGG	3 cut(s)	1006, 1712, 2117
BseDI	CCNNGG	4 cut(s)	477, 1005, 1192, 1209
BseGI	GGATG	6 cut(s)	823, 1142, 1188, 1642, 1834, 1898
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	6 cut(s)	271, 335, 443, 1634, 1962, 2134
BseMI	GCAATG	1 cut(s)	1860
BseMII	CTCAG	6 cut(s)	395, 464, 687, 1398, 1877, 2040
BseRI	GAGGAG	4 cut(s)	494, 576, 579, 848
BseSI	GKGCMC	2 cut(s)	449, 658
Bsh1236I	CGCG	2 cut(s)	251, 807
BshFI	GGCC	4 cut(s)	56, 264, 1227, 1638
BshNI	GGYRCC	3 cut(s)	424, 455, 1196
BsiHKAI	GWGCWC	2 cut(s)	882, 1689
BsiHKCI	CYCGRG	2 cut(s)	1542, 1584
BsiSI	CCGG	6 cut(s)	25, 53, 266, 1082, 1209, 1963
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	6 cut(s)	271, 335, 443, 1634, 1962, 2134
BsmAI	GTCTC	8 cut(s)	201, 561, 588, 795, 815, 1003, 1241, 2156
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	3 cut(s)	1495, 2008, 2113
BsnI	GGCC	4 cut(s)	56, 264, 1227, 1638
Bso31I	GGTCTC	3 cut(s)	561, 795, 815
BsoBI	CYCGRG	2 cut(s)	1542, 1584
Bsp1286I	GDGCHC	4 cut(s)	449, 658, 882, 1689
Bsp13I	TCCGGA	2 cut(s)	24, 1081
Bsp1720I	GCTNAGC	1 cut(s)	696
Bsp68I	TCGCGA	1 cut(s)	251
BspACI	CCGC	4 cut(s)	269, 272, 293, 991
BspANI	GGCC	4 cut(s)	56, 264, 1227, 1638
BspCNI	CTCAG	6 cut(s)	394, 463, 688, 1399, 1876, 2041
BspEI	TCCGGA	2 cut(s)	24, 1081
BspFNI	CGCG	2 cut(s)	251, 807
BspLI	GGNNCC	7 cut(s)	426, 457, 775, 969, 1198, 1785, 2082
BspMAI	CTGCAG	1 cut(s)	411
BspPI	GGATC	7 cut(s)	310, 962, 975, 1939, 2035, 2075, 2088
BspQI	GCTCTTC	1 cut(s)	1053
BspT107I	GGYRCC	3 cut(s)	424, 455, 1196
BspTNI	GGTCTC	3 cut(s)	561, 795, 815
BsrBI	CCGCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	1860
BssECI	CCNNGG	4 cut(s)	477, 1005, 1192, 1209
BssNI	GRCGYC	4 cut(s)	221, 326, 456, 527
Bst2UI	CCWGG	3 cut(s)	1006, 1712, 2117
Bst4CI	ACNGT	5 cut(s)	230, 373, 653, 1400, 1629
Bst6I	CTCTTC	4 cut(s)	825, 1053, 1325, 1764
BstACI	GRCGYC	4 cut(s)	221, 326, 456, 527
BstAPI	GCANNNNNTGC	3 cut(s)	1673, 1757, 1859
BstC8I	GCNNGC	4 cut(s)	309, 711, 1807, 1860
BstDEI	CTNAG	8 cut(s)	58, 381, 450, 696, 1257, 1407, 1863, 2049
BstF5I	GGATG	6 cut(s)	823, 1142, 1188, 1642, 1834, 1898
BstFNI	CGCG	2 cut(s)	251, 807
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	4 cut(s)	458, 577, 755, 1944
BstMAI	GTCTC	8 cut(s)	201, 561, 588, 795, 815, 1003, 1241, 2156
BstMWI	GCNNNNNNNGC	7 cut(s)	403, 453, 706, 1673, 1757, 1859, 1948
BstNI	CCWGG	3 cut(s)	1006, 1712, 2117
BstNSI	RCATGY	2 cut(s)	1039, 1671
BstSCI	CCNGG	7 cut(s)	51, 264, 1004, 1208, 1710, 1961, 2115
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	2 cut(s)	449, 658
BstUI	CGCG	2 cut(s)	251, 807
BstV2I	GAAGAC	2 cut(s)	1352, 2024
BstX2I	RGATCY	5 cut(s)	315, 967, 1159, 2040, 2080
BstYI	RGATCY	5 cut(s)	315, 967, 1159, 2040, 2080
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	4 cut(s)	56, 264, 1227, 1638
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	6 cut(s)	823, 1142, 1188, 1642, 1834, 1898
BtsIMutI	CAGTG	8 cut(s)	652, 658, 1396, 1744, 1751, 1905, 2046, 2091
BtuMI	TCGCGA	1 cut(s)	251
Cac8I	GCNNGC	4 cut(s)	309, 711, 1807, 1860
CaiI	CAGNNNCTG	1 cut(s)	1340
CfoI	GCGC	4 cut(s)	458, 577, 755, 1944
Cfr13I	GGNCC	4 cut(s)	263, 548, 1637, 2225
CseI	GACGC	5 cut(s)	210, 334, 516, 631, 796
Csp6I	GTAC	4 cut(s)	1077, 1338, 1606, 1726
CspCI	CAANNNNNGTGG	4 cut(s)	188, 223, 2035, 2070
CviQI	GTAC	4 cut(s)	1077, 1338, 1606, 1726
DdeI	CTNAG	8 cut(s)	58, 381, 450, 696, 1257, 1407, 1863, 2049
DinI	GGCGCC	1 cut(s)	457
DrdI	GACNNNNNNGTC	2 cut(s)	787, 1354
DseDI	GACNNNNNNGTC	2 cut(s)	787, 1354
Eam1104I	CTCTTC	4 cut(s)	825, 1053, 1325, 1764
EarI	CTCTTC	4 cut(s)	825, 1053, 1325, 1764
Eco147I	AGGCCT	1 cut(s)	1227
Eco31I	GGTCTC	3 cut(s)	561, 795, 815
Eco32I	GATATC	2 cut(s)	83, 117
Eco47I	GGWCC	2 cut(s)	548, 2225
Eco57I	CTGAAG	7 cut(s)	24, 1077, 1788, 2043, 2052, 2150, 2226
Eco88I	CYCGRG	2 cut(s)	1542, 1584
EcoRI	GAATTC	1 cut(s)	922
EcoRII	CCWGG	3 cut(s)	1004, 1710, 2115
EcoRV	GATATC	2 cut(s)	83, 117
EcoT22I	ATGCAT	3 cut(s)	1245, 1678, 2113
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	201
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 2141, 2173
FaqI	GGGAC	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	1363
FblI	GTMKAC	1 cut(s)	1358
FokI	GGATG	6 cut(s)	830, 1129, 1175, 1629, 1821, 1905
FspBI	CTAG	2 cut(s)	1152, 2236
FspI	TGCGCA	1 cut(s)	576
GlaI	GCGC	4 cut(s)	457, 576, 754, 1943
GsuI	CTGGAG	3 cut(s)	488, 792, 1085
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	56, 264, 1227, 1638
HapII	CCGG	6 cut(s)	25, 53, 266, 1082, 1209, 1963
HgaI	GACGC	5 cut(s)	210, 334, 516, 631, 796
HhaI	GCGC	4 cut(s)	458, 577, 755, 1944
Hin1I	GRCGYC	4 cut(s)	221, 326, 456, 527
Hin6I	GCGC	4 cut(s)	456, 575, 753, 1942
HinP1I	GCGC	4 cut(s)	456, 575, 753, 1942
HincII	GTYRAC	3 cut(s)	747, 895, 1903
HindII	GTYRAC	3 cut(s)	747, 895, 1903
HinfI	GANTC	2 cut(s)	71, 981
HpaII	CCGG	6 cut(s)	25, 53, 266, 1082, 1209, 1963
HphI	GGTGA	5 cut(s)	242, 286, 385, 658, 849
Hpy166II	GTNNAC	7 cut(s)	666, 747, 857, 895, 1359, 1903, 2089
Hpy8I	GTNNAC	7 cut(s)	666, 747, 857, 895, 1359, 1903, 2089
Hpy99I	CGWCG	6 cut(s)	328, 359, 373, 433, 532, 812
HpyAV	CCTTC	7 cut(s)	370, 595, 843, 895, 1424, 1917, 2076
HpyCH4III	ACNGT	5 cut(s)	230, 373, 653, 1400, 1629
HpyCH4IV	ACGT	1 cut(s)	743
HpyF10VI	GCNNNNNNNGC	7 cut(s)	403, 453, 706, 1673, 1757, 1859, 1948
HpyF3I	CTNAG	8 cut(s)	58, 381, 450, 696, 1257, 1407, 1863, 2049
HpySE526I	ACGT	1 cut(s)	743
Hsp92I	GRCGYC	4 cut(s)	221, 326, 456, 527
HspAI	GCGC	4 cut(s)	456, 575, 753, 1942
KasI	GGCGCC	1 cut(s)	455
Kpn2I	TCCGGA	2 cut(s)	24, 1081
Ksp22I	TGATCA	1 cut(s)	1363
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	6 cut(s)	290, 507, 773, 835, 1692, 1783
LweI	GCATC	4 cut(s)	483, 1663, 1843, 1966
MaeI	CTAG	2 cut(s)	1152, 2236
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	8 cut(s)	147, 230, 274, 515, 647, 739, 1124, 1570
MbiI	CCGCTC	1 cut(s)	293
MflI	RGATCY	5 cut(s)	315, 967, 1159, 2040, 2080
MhlI	GDGCHC	4 cut(s)	449, 658, 882, 1689
MluCI	AATT	9 cut(s)	95, 109, 201, 922, 1069, 1380, 2008, 2211, 2230
MluI	ACGCGT	1 cut(s)	805
Mly113I	GGCGCC	1 cut(s)	456
MmeI	TCCRAC	5 cut(s)	1069, 1382, 1494, 1862, 2079
Mph1103I	ATGCAT	3 cut(s)	1245, 1678, 2113
MroI	TCCGGA	2 cut(s)	24, 1081
MroXI	GAANNNNTTC	2 cut(s)	853, 2211
MseI	TTAA	5 cut(s)	1164, 1706, 1779, 1947, 2148
MslI	CAYNNNNRTG	3 cut(s)	138, 869, 887
MspI	CCGG	6 cut(s)	25, 53, 266, 1082, 1209, 1963
MspR9I	CCNGG	7 cut(s)	53, 266, 1006, 1210, 1712, 1963, 2117
Mva1269I	GAATGC	3 cut(s)	1495, 2008, 2113
MvaI	CCWGG	3 cut(s)	1006, 1712, 2117
MvnI	CGCG	2 cut(s)	251, 807
MwoI	GCNNNNNNNGC	7 cut(s)	403, 453, 706, 1673, 1757, 1859, 1948
NarI	GGCGCC	1 cut(s)	456
NciI	CCSGG	4 cut(s)	53, 266, 1210, 1963
NlaIV	GGNNCC	7 cut(s)	426, 457, 775, 969, 1198, 1785, 2082
NmeAIII	GCCGAG	3 cut(s)	344, 1173, 1781
NmuCI	GTSAC	4 cut(s)	147, 230, 274, 647
NruI	TCGCGA	1 cut(s)	251
NsbI	TGCGCA	1 cut(s)	576
NsiI	ATGCAT	3 cut(s)	1245, 1678, 2113
NspI	RCATGY	2 cut(s)	1039, 1671
PaeR7I	CTCGAG	1 cut(s)	1542
PceI	AGGCCT	1 cut(s)	1227
PciI	ACATGT	1 cut(s)	1035
PciSI	GCTCTTC	1 cut(s)	1053
PcsI	WCGNNNNNNNCGW	3 cut(s)	428, 474, 740
PctI	GAATGC	3 cut(s)	1495, 2008, 2113
PdmI	GAANNNNTTC	2 cut(s)	853, 2211
PfeI	GAWTC	2 cut(s)	71, 981
PflFI	GACNNNGTC	1 cut(s)	1050
PluTI	GGCGCC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	1826
Psp6I	CCWGG	3 cut(s)	1004, 1710, 2115
PspGI	CCWGG	3 cut(s)	1004, 1710, 2115
PspN4I	GGNNCC	7 cut(s)	426, 457, 775, 969, 1198, 1785, 2082
PspPI	GGNCC	4 cut(s)	263, 548, 1637, 2225
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	1340
PsuI	RGATCY	5 cut(s)	315, 967, 1159, 2040, 2080
PsyI	GACNNNGTC	1 cut(s)	1050
RruI	TCGCGA	1 cut(s)	251
RsaI	GTAC	4 cut(s)	1078, 1339, 1607, 1727
RsaNI	GTAC	4 cut(s)	1077, 1338, 1606, 1726
RseI	CAYNNNNRTG	3 cut(s)	138, 869, 887
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	5 cut(s)	1164, 1706, 1779, 1947, 2148
Sau96I	GGNCC	4 cut(s)	263, 548, 1637, 2225
ScrFI	CCNGG	7 cut(s)	53, 266, 1006, 1210, 1712, 1963, 2117
SduI	GDGCHC	4 cut(s)	449, 658, 882, 1689
SfaNI	GCATC	4 cut(s)	483, 1663, 1843, 1966
SfcI	CTRYAG	1 cut(s)	407
SfoI	GGCGCC	1 cut(s)	457
Sfr274I	CTCGAG	1 cut(s)	1542
SinI	GGWCC	2 cut(s)	548, 2225
SlaI	CTCGAG	1 cut(s)	1542
SmiMI	CAYNNNNRTG	3 cut(s)	138, 869, 887
SmlI	CTYRAG	4 cut(s)	659, 1462, 1542, 2036
SmoI	CTYRAG	4 cut(s)	659, 1462, 1542, 2036
Sse9I	AATT	9 cut(s)	95, 109, 201, 922, 1069, 1380, 2008, 2211, 2230
SseBI	AGGCCT	1 cut(s)	1227
SsiI	CCGC	4 cut(s)	269, 272, 293, 991
SspDI	GGCGCC	1 cut(s)	455
SspMI	CTAG	2 cut(s)	1152, 2236
StuI	AGGCCT	1 cut(s)	1227
StyD4I	CCNGG	7 cut(s)	51, 264, 1004, 1208, 1710, 1961, 2115
TaaI	ACNGT	5 cut(s)	230, 373, 653, 1400, 1629
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	4 cut(s)	85, 390, 1428, 1543
TaqII	GACCGA	2 cut(s)	135, 777
TasI	AATT	9 cut(s)	95, 109, 201, 922, 1069, 1380, 2008, 2211, 2230
TatI	WGTACW	1 cut(s)	1605
TauI	GCSGC	2 cut(s)	272, 296
TfiI	GAWTC	2 cut(s)	71, 981
Tru1I	TTAA	5 cut(s)	1164, 1706, 1779, 1947, 2148
Tru9I	TTAA	5 cut(s)	1164, 1706, 1779, 1947, 2148
TscAI	CASTG	8 cut(s)	652, 658, 1403, 1744, 1758, 1912, 2053, 2091
TseFI	GTSAC	4 cut(s)	147, 230, 274, 647
Tsp45I	GTSAC	4 cut(s)	147, 230, 274, 647
TspDTI	ATGAA	9 cut(s)	60, 171, 389, 738, 877, 1015, 1232, 1407, 1723
TspGWI	ACGGA	2 cut(s)	249, 303
TspRI	CASTG	8 cut(s)	652, 658, 1403, 1744, 1758, 1912, 2053, 2091
Tth111I	GACNNNGTC	1 cut(s)	1050
VpaK11BI	GGWCC	2 cut(s)	548, 2225
XapI	RAATTY	6 cut(s)	109, 201, 922, 1069, 2211, 2230
XceI	RCATGY	2 cut(s)	1039, 1671
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1736, 2091
XhoI	CTCGAG	1 cut(s)	1542
XmiI	GTMKAC	1 cut(s)	1358
XmnI	GAANNNNTTC	2 cut(s)	853, 2211
XspI	CTAG	2 cut(s)	1152, 2236
Zsp2I	ATGCAT	3 cut(s)	1245, 1678, 2113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.