Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

14432830 .. 14433566

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22511.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAACTTCTTCTTTATCTATTCTCTCGCCTCAGGACGACAACCTCTTACTATTGAAGATAGCTTGTTGGTGTGCTGGCAGATCTGGAAGGCGAGAAACAATGTTATCTTCCAATCTGCTCAAGTCACTCCTTCAGCTATTGTGCATGCTGTAGCTGCTATAGGCTCTGCATATCGTCTCATCAACAGGAAGATTTCCTCCAGCACTCCTAGAAATCTGGAGACCATTAGATGGATTCCCCCTGCTCATGAGCGGAAGCTTCACAATTCTTCTGTTCCGTTGGCTGAATGCATAGCTTTAAAAGAAAGACTCCTTGCTACTAAAAGATGCAACTGTAACCAAATCGAAGTAGAAGGATACTCTTCCCTTATCATCAACTGTGTCAAAGGGTCTTGTGCTATTCCTTGGAAGCTCAAGTCCTTGATCCGAGATGTTATAGCTCTTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

151

Amino Acids

16.81

Weight (kDa)

9.47

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccBSI	CCGCTC	1 cut(s)	253
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	7 cut(s)	63, 137, 155, 259, 296, 412, 440
AluI	AGCT	7 cut(s)	63, 137, 155, 259, 296, 412, 440
Alw26I	GTCTC	2 cut(s)	182, 215
AlwI	GGATC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	182, 215
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	2 cut(s)	150, 159
BfuI	GTATCC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	317
BpmI	CTGGAG	2 cut(s)	184, 239
BpuEI	CTTGAG	2 cut(s)	105, 398
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	182, 215
BsmBI	CGTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	81, 423
BspACI	CCGC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	247
BspPI	GGATC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	81, 423
BssT1I	CCWWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	335, 380
Bst6I	CTCTTC	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	77, 147
BstDEI	CTNAG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	84, 426
BstMAI	GTCTC	2 cut(s)	182, 215
BstMBI	GATC	2 cut(s)	81, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	150, 159
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	77, 147
CciI	TCATGA	1 cut(s)	247
CviAII	CATG	2 cut(s)	146, 248
CviJI	RGCY	9 cut(s)	63, 137, 155, 165, 259, 284, 296, 412, 440
CviKI_1	RGCY	9 cut(s)	63, 137, 155, 165, 259, 284, 296, 412, 440
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	2 cut(s)	83, 425
DpnII	GATC	2 cut(s)	81, 423
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	117
Eco81I	CCTNAGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	404
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	149, 251
FaiI	YATR	6 cut(s)	147, 161, 172, 249, 293, 437
FatI	CATG	2 cut(s)	145, 247
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	2 cut(s)	184, 239
Hin1II	CATG	2 cut(s)	149, 251
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	2 cut(s)	235, 309
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	4 cut(s)	33, 85, 218, 248
HpyAV	CCTTC	3 cut(s)	82, 141, 347
HpyCH4III	ACNGT	2 cut(s)	335, 380
HpyCH4V	TGCA	4 cut(s)	145, 170, 291, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	149, 251
Kzo9I	GATC	2 cut(s)	81, 423
LpnPI	CCDG	7 cut(s)	18, 61, 70, 172, 203, 214, 255
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	124, 335
MalI	GATC	2 cut(s)	83, 425
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	2 cut(s)	81, 423
MboII	GAAGA	5 cut(s)	68, 100, 202, 261, 354
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	40, 54, 208
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	81, 423
NlaIII	CATG	2 cut(s)	149, 251
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PagI	TCATGA	1 cut(s)	247
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	81, 423
SchI	GAGTC	1 cut(s)	303
SetI	ASST	8 cut(s)	46, 65, 139, 157, 261, 298, 414, 442
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	2 cut(s)	150, 159
SmlI	CTYRAG	2 cut(s)	120, 413
SmoI	CTYRAG	2 cut(s)	120, 413
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	335, 380
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	231
XceI	RCATGY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.