Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

13044435 .. 13045614

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTGGCTCTGCTTATCGTCAAGTTAATGGCTCTAGTGGTCTTGTTGCTGCTAGTAAAGCTGATGTGATCAAATGGATTCATCATGCCCCAGACTGGGTCAGACTCAAATTTGATGGCTCTATGATGAACTCCTCTGATGCTGCTGGGTTTGTCATTACAAATTTCTCTAGTGATCCTCTAGTTGCTGGTGCTCGTCGACTCCATCCCTCAAGTGTCCCTGTTGCCGAGTGTCATGCTCTTAGAGATGATTTGGGTCACTCTCTCACTAACCCGAAGATTTGGTGCAATATCATTCCTGCTCAAGCTTATATTGCCTTGCATTTAGATGTGATTCAACCACCATTTGCCGTACGGCCCGTACCTGCCATTGCTCATGCTTCTTACTCCTGCCACCGTGCAGCCATCCACTCCAGGCCACCACAGCAACCGACCCACGCAGCCCTTATCTTCAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

154

Amino Acids

16.5

Weight (kDa)

8.96

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	110, 163
AcuI	CTGAAG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	354, 363
AfiI	CCNNNNNNNGG	2 cut(s)	96, 97
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	3 cut(s)	62, 308, 456
AluI	AGCT	3 cut(s)	62, 308, 456
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	356, 416
ApeKI	GCWGC	4 cut(s)	50, 143, 401, 440
ApoI	RAATTY	2 cut(s)	110, 163
AspS9I	GGNCC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	37, 130, 413, 452
BccI	CCATC	3 cut(s)	110, 213, 413
BceAI	ACGGC	2 cut(s)	335, 371
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	4 cut(s)	36, 54, 171, 182
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	4 cut(s)	51, 144, 402, 441
BlsI	GCNGC	4 cut(s)	52, 145, 403, 442
Bme1390I	CCNGG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	397
BpuEI	CTTGAG	2 cut(s)	196, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 97
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	205, 405
BseLI	CCNNNNNNNGG	2 cut(s)	96, 97
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	37, 130, 413, 452
BseYI	CCCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	358, 418
BsiHKAI	GWGCWC	1 cut(s)	196
BsiWI	CGTACG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	96, 97
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	358, 418
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	69, 175
BspANI	GGCC	2 cut(s)	358, 418
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	69, 175
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	205, 405
BstKTI	GATC	2 cut(s)	72, 178
BstMBI	GATC	2 cut(s)	69, 175
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 314, 424
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	37, 130, 413, 452
BsuRI	GGCC	2 cut(s)	358, 418
BtsCI	GGATG	2 cut(s)	205, 405
BveI	ACCTGC	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	353, 362
CviAII	CATG	3 cut(s)	86, 236, 377
CviQI	GTAC	2 cut(s)	353, 362
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	71, 177
DpnII	GATC	2 cut(s)	69, 175
Eco57I	CTGAAG	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	413
FaeI	CATG	3 cut(s)	89, 239, 380
FaiI	YATR	5 cut(s)	87, 125, 237, 312, 378
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	85, 235, 376
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	51, 144, 402, 441
FokI	GGATG	2 cut(s)	192, 392
Fsp4HI	GCNGC	4 cut(s)	51, 144, 402, 441
FspBI	CTAG	4 cut(s)	36, 54, 171, 182
GluI	GCNGC	4 cut(s)	51, 144, 402, 441
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	358, 418
Hin1II	CATG	3 cut(s)	89, 239, 380
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	4 cut(s)	79, 105, 201, 334
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	104, 139
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	288, 322, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 314, 424
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	89, 239, 380
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 175
Lsp1109I	GCAGC	4 cut(s)	37, 130, 413, 452
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	4 cut(s)	36, 54, 171, 182
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	71, 177
MboI	GATC	2 cut(s)	69, 175
MboII	GAAGA	2 cut(s)	289, 442
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	110, 163
MlyI	GAGTC	2 cut(s)	99, 195
MnlI	CCTC	3 cut(s)	145, 189, 220
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	59, 314, 424
NdeII	GATC	2 cut(s)	69, 175
NlaIII	CATG	3 cut(s)	89, 239, 380
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	79, 334
Pfl23II	CGTACG	1 cut(s)	352
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	52, 145, 403, 442
PleI	GAGTC	2 cut(s)	99, 195
PpsI	GAGTC	2 cut(s)	99, 195
Psp6I	CCWGG	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	413
PspLI	CGTACG	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	357
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	2 cut(s)	354, 363
RsaNI	GTAC	2 cut(s)	353, 362
RseI	CAYNNNNRTG	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	51, 144, 402, 441
Sau3AI	GATC	2 cut(s)	69, 175
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	2 cut(s)	99, 195
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	4 cut(s)	64, 310, 367, 458
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	211, 303
SmoI	CTYRAG	2 cut(s)	211, 303
Sse9I	AATT	2 cut(s)	110, 163
SspMI	CTAG	4 cut(s)	36, 54, 171, 182
StyD4I	CCNGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	199
TasI	AATT	2 cut(s)	110, 163
TfiI	GAWTC	2 cut(s)	79, 334
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	4 cut(s)	50, 143, 401, 440
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	71, 143
Tth111I	GACNNNGTC	1 cut(s)	98
XapI	RAATTY	2 cut(s)	110, 163
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	4 cut(s)	36, 54, 171, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.