pycom02g11570

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001617
Physical Location & Seq
Reverse (-)
8150267 .. 8150992
726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11570.2

Sequence Viewer

Length: 285 bp
ATGATTCCGGCATGGAGGCTCCGATGCTTAAGTCAGCAAGAGCTTGGCCTTATATTCACTCTGGGTCTAACCCCTGTGAAGTGGATGTATATTGCTATCACTCCGGGAAGGTGGCATTTTGGGCCTTACAATGCCACTATCACTATTGTGGAAGCTACTGCCTTGAGGGAAGGATTGCTGCTTGCCAGGAGAAAGGTTATCCAAAAATTAATGGTTGAAGGGGACTCAAAGTTAGTTATCCAAATGTCTCGAGGTGAGTGGACTCCACCTTGGCACCTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

95

Amino Acids

10.8

Weight (kDa)

10.01

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 3 cut(s) 43, 155, 282
AluI AGCT 3 cut(s) 43, 155, 282
Alw26I GTCTC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 2 cut(s) 46, 122
ApeKI GCWGC 1 cut(s) 178
AseI ATTAAT 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 249
BanI GGYRCC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 28
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 105, 187
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 20, 275
BmrFI CCNGG 2 cut(s) 105, 187
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 165
BshFI GGCC 2 cut(s) 48, 124
BshNI GGYRCC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 8, 104
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 48, 124
BsoBI CYCGRG 1 cut(s) 249
BspANI GGCC 2 cut(s) 48, 124
BspLI GGNNCC 2 cut(s) 20, 275
BspT107I GGYRCC 1 cut(s) 273
BspTI CTTAAG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 187
BstAFI CTTAAG 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 103, 185
BstV1I GCAGC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 48, 124
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 1 cut(s) 12
CviJI RGCY 6 cut(s) 19, 43, 48, 124, 155, 282
CviKI_1 RGCY 6 cut(s) 19, 43, 48, 124, 155, 282
DdeI CTNAG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 15
FaiI YATR 3 cut(s) 13, 53, 90
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 48, 124
HapII CCGG 2 cut(s) 8, 104
Hin1II CATG 1 cut(s) 15
HinfI GANTC 3 cut(s) 4, 224, 262
HpaII CCGG 2 cut(s) 8, 104
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 3 cut(s) 102, 164, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 1 cut(s) 15
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 6 cut(s) 21, 47, 87, 117, 172, 199
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 283
MluCI AATT 1 cut(s) 206
MlyI GAGTC 2 cut(s) 218, 256
MnlI CCTC 3 cut(s) 9, 159, 245
MseI TTAA 2 cut(s) 29, 209
MslI CAYNNNNRTG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 2 cut(s) 8, 104
MspR9I CCNGG 2 cut(s) 105, 187
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 105
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 20, 275
OliI CACNNNNGTG 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 249
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 2 cut(s) 218, 256
PpsI GAGTC 2 cut(s) 218, 256
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 20, 275
PspPI GGNCC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 29, 209
SatI GCNGC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 218, 256
ScrFI CCNGG 2 cut(s) 105, 187
SetI ASST 8 cut(s) 45, 113, 157, 198, 256, 271, 279, 284
SfaNI GCATC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 3 cut(s) 28, 163, 249
SmoI CTYRAG 3 cut(s) 28, 163, 249
Sse9I AATT 1 cut(s) 206
SspMI CTAG 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 103, 185
StyI CCWWGG 1 cut(s) 269
TaqI TCGA 1 cut(s) 250
TasI AATT 1 cut(s) 206
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 29, 209
Tru9I TTAA 2 cut(s) 29, 209
TseI GCWGC 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 28
VspI ATTAAT 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 249
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.