Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

66662312 .. 66662914

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTTGTCCATGCGGCAGCTGCTGCCGCATATAATTATCGGGCTCACAACTCCATTCCTTCTGTGTCTCGAGCTAGAGATTATGGCCTAATCAGATGGACCCCTCCTCAGGAAGGTTCAGTCAAGCTAAATTTTGATGGTTCGGTTGATGGCTCTAATATGGCGGCTGCCGGGTTTGTGATCAGAGATCACTCAGGCTTTCCGATTGTGGCAGGAAGTAGAAAGATTGGTTTATCTTCTGTGCCGGTTGCAGAGTGTAGCGCCCTCAAAGACGGTCTCCTTCAGGCGCTGCATAGCAACTTATCCAAAATTTCTGTTGAAGGTGACTCAAAGCTGGTCATTGACTGCATCAAGAAGATTCATGCTCCCCCTTGGCGTTTGAGACCTTTGATTAGAGACATTCAGATTATATCTTCCTTCTTTGAGGACATCAGTTTCTCTCATGTTCCTCGAGAGGCGAACTTCGTGGCAGATGCGGTTACGTCCTTGGGTCACCAAGCGTTTGAACCAACTATCTGGAGAAACAAACTTCCTCTCTCAGCCAGTTCTGCTCTCAATTTAGATCAGTTAGGGTGTGGTGTTTCTAGGGGTTTTCTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

200

Amino Acids

21.57

Weight (kDa)

8.86

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	44 - 160	8.1e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 27, 164, 476
AcsI	RAATTY	2 cut(s)	130, 309
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	109, 113
AgsI	TTSAA	2 cut(s)	320, 506
AluBI	AGCT	4 cut(s)	20, 74, 127, 334
AluI	AGCT	4 cut(s)	20, 74, 127, 334
Alw26I	GTCTC	4 cut(s)	72, 281, 376, 390
AlwNI	CAGNNNCTG	2 cut(s)	23, 289
Ama87I	CYCGRG	2 cut(s)	69, 450
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 167, 289
ApoI	RAATTY	2 cut(s)	130, 309
AspLEI	GCGC	2 cut(s)	263, 289
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	335, 485
AvaI	CYCGRG	2 cut(s)	69, 450
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	46
BbvI	GCAGC	5 cut(s)	7, 10, 29, 154, 276
BccI	CCATC	3 cut(s)	90, 131, 143
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	4 cut(s)	72, 281, 376, 390
BfaI	CTAG	2 cut(s)	75, 585
BfoI	RGCGCY	2 cut(s)	264, 290
BisI	GCNGC	8 cut(s)	15, 18, 21, 24, 27, 165, 168, 290
BlsI	GCNGC	8 cut(s)	16, 19, 22, 25, 28, 166, 169, 291
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	2 cut(s)	69, 450
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	357, 463
BpmI	CTGGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	172
BsaI	GGTCTC	2 cut(s)	281, 376
BsaJI	CCNNGG	2 cut(s)	371, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 113
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	543
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	371, 486
BseLI	CCNNNNNNNGG	2 cut(s)	109, 113
BseMII	CTCAG	3 cut(s)	122, 207, 552
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	7, 10, 29, 154, 276
BshFI	GGCC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	69, 450
BsiSI	CCGG	2 cut(s)	171, 245
BslI	CCNNNNNNNGG	2 cut(s)	109, 113
BsmAI	GTCTC	4 cut(s)	72, 281, 376, 390
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	2 cut(s)	281, 376
BsoBI	CYCGRG	2 cut(s)	69, 450
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	180, 187, 562
BspACI	CCGC	4 cut(s)	14, 27, 164, 476
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	121, 206, 551
BspLI	GGNNCC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	281, 376
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	543
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	371, 486
BssMI	GATC	3 cut(s)	180, 187, 562
BssT1I	CCWWGG	2 cut(s)	371, 486
Bst4CI	ACNGT	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	108, 193, 538
BstEII	GGTNACC	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstH2I	RGCGCY	2 cut(s)	264, 290
BstHHI	GCGC	2 cut(s)	263, 289
BstKTI	GATC	3 cut(s)	183, 190, 565
BstMAI	GTCTC	4 cut(s)	72, 281, 376, 390
BstMBI	GATC	3 cut(s)	180, 187, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 23, 26, 548
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	5 cut(s)	7, 10, 29, 154, 276
BstXI	CCANNNNNNTGG	1 cut(s)	516
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	87
CaiI	CAGNNNCTG	2 cut(s)	23, 289
CfoI	GCGC	2 cut(s)	263, 289
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	99
CviAII	CATG	3 cut(s)	11, 362, 443
DdeI	CTNAG	3 cut(s)	108, 193, 538
DpnI	GATC	3 cut(s)	182, 189, 564
DpnII	GATC	3 cut(s)	180, 187, 562
Eco130I	CCWWGG	2 cut(s)	371, 486
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	2 cut(s)	281, 376
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	69, 450
Eco91I	GGTNACC	1 cut(s)	491
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	491
EcoT14I	CCWWGG	2 cut(s)	371, 486
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	371, 486
FaeI	CATG	3 cut(s)	14, 365, 446
FaiI	YATR	9 cut(s)	12, 31, 33, 84, 161, 294, 363, 410, 444
FatI	CATG	3 cut(s)	10, 361, 442
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 27, 165, 168, 290
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 27, 165, 168, 290
FspBI	CTAG	2 cut(s)	75, 585
GlaI	GCGC	2 cut(s)	262, 288
GluI	GCNGC	8 cut(s)	15, 18, 21, 24, 27, 165, 168, 290
GsuI	CTGGAG	1 cut(s)	538
HaeII	RGCGCY	2 cut(s)	264, 290
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	171, 245
HhaI	GCGC	2 cut(s)	263, 289
Hin1II	CATG	3 cut(s)	14, 365, 446
Hin6I	GCGC	2 cut(s)	261, 287
HinP1I	GCGC	2 cut(s)	261, 287
HinfI	GANTC	2 cut(s)	326, 358
HpaII	CCGG	2 cut(s)	171, 245
HphI	GGTGA	2 cut(s)	335, 485
Hpy188I	TCNGA	4 cut(s)	95, 185, 204, 405
Hpy188III	TCNNGA	5 cut(s)	69, 110, 352, 452, 517
HpyAV	CCTTC	5 cut(s)	69, 107, 290, 314, 427
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	3 cut(s)	251, 292, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 23, 26, 548
HpyF3I	CTNAG	3 cut(s)	108, 193, 538
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	14, 365, 446
HspAI	GCGC	2 cut(s)	261, 287
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	180, 187, 562
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	95, 180, 184, 198, 258, 269, 320, 502, 556
Lsp1109I	GCAGC	5 cut(s)	7, 10, 29, 154, 276
LweI	GCATC	2 cut(s)	357, 463
MaeI	CTAG	2 cut(s)	75, 585
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	323, 478, 491
MalI	GATC	3 cut(s)	182, 189, 564
MboI	GATC	3 cut(s)	180, 187, 562
MboII	GAAGA	3 cut(s)	228, 367, 405
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	34, 130, 309, 556
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	7 cut(s)	114, 117, 275, 418, 448, 459, 543
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	171, 245
MspR9I	CCNGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	20, 23, 26, 548
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	180, 187, 562
NlaIII	CATG	3 cut(s)	14, 365, 446
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	323, 491
PaeR7I	CTCGAG	2 cut(s)	69, 450
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	8 cut(s)	16, 19, 22, 25, 28, 166, 169, 291
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PspEI	GGTNACC	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	99
PstNI	CAGNNNCTG	2 cut(s)	23, 289
PvuII	CAGCTG	1 cut(s)	20
SatI	GCNGC	8 cut(s)	15, 18, 21, 24, 27, 165, 168, 290
Sau3AI	GATC	3 cut(s)	180, 187, 562
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	22, 76, 118, 129, 325, 336, 388, 485
SfaNI	GCATC	2 cut(s)	357, 463
Sfr274I	CTCGAG	2 cut(s)	69, 450
SinI	GGWCC	1 cut(s)	99
SlaI	CTCGAG	2 cut(s)	69, 450
SmlI	CTYRAG	2 cut(s)	69, 450
SmoI	CTYRAG	2 cut(s)	69, 450
Sse9I	AATT	4 cut(s)	34, 130, 309, 556
SsiI	CCGC	4 cut(s)	14, 27, 164, 476
SspMI	CTAG	2 cut(s)	75, 585
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	371, 486
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	2 cut(s)	70, 451
TasI	AATT	4 cut(s)	34, 130, 309, 556
TauI	GCSGC	3 cut(s)	17, 29, 167
TfiI	GAWTC	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	323, 491
TseI	GCWGC	5 cut(s)	17, 20, 23, 167, 289
Tsp45I	GTSAC	2 cut(s)	323, 491
TspDTI	ATGAA	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	2 cut(s)	130, 309
XhoI	CTCGAG	2 cut(s)	69, 450
XspI	CTAG	2 cut(s)	75, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.