Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009977.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

16249 .. 18401

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009977.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaaggcgacggcgtgggtggagttggctacgattagagggatgagggatgatagagagagagggtcctcagagatttttaacatttcgaagaatttcacctttattgagaatgctattgtgctttgttggaaaatctggcaagccggaaataatctcatctttaggaacgtatctgctgacccgaaaatggtagtgcatgctgcagctgcagctgggaattcttatagagctcacaatccttcccacatgaagatctctgctggttttgtcattagaaaccatgctggctcgcctgtggtggctggaactaggaagattggctccactactgttcttgtggcggagtgtagcgcgcttaaagatggtctcctccatgcactgcatctcaactgctctaagattctagtggagggtgattcaaaggtggtgatcgactgtggaaaatttgttctcttgttcgtgacatccaagacatctctagtatttttgaggaaatctctttctctcatattcctcgtgaagcaaattttgtggcggacgcaattgcctcccttggatatcaatcttttggtgcgattttatggggagacaaacttcctctttcagcttgctcgacttttaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

209

Amino Acids

23.21

Weight (kDa)

9.87

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	356
AciI	CCGC	2 cut(s)	344, 538
AcsI	RAATTY	4 cut(s)	94, 220, 446, 528
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	423
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	4 cut(s)	209, 215, 233, 610
AluI	AGCT	4 cut(s)	209, 215, 233, 610
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	374, 584
ApeKI	GCWGC	4 cut(s)	203, 206, 209, 212
ApoI	RAATTY	4 cut(s)	94, 220, 446, 528
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	356, 358
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	91, 428, 442
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	235
BauI	CACGAG	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	190, 196, 218, 224
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	374, 584
BfaI	CTAG	3 cut(s)	312, 407, 482
BfmI	CTRYAG	2 cut(s)	204, 210
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	4 cut(s)	204, 207, 210, 213
BlsI	GCNGC	4 cut(s)	205, 208, 211, 214
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	67, 325
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
Bpu14I	TTCGAA	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	3 cut(s)	48, 55, 467
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	84
BsePI	GCGCGC	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	190, 196, 218, 224
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	374, 584
BsmI	GAATGC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	255, 432
BspACI	CCGC	2 cut(s)	344, 538
BspCNI	CTCAG	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	67, 325
BspMAI	CTGCAG	2 cut(s)	208, 214
BspT104I	TTCGAA	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	555
BssHII	GCGCGC	1 cut(s)	354
BssMI	GATC	2 cut(s)	255, 432
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	518
Bst4CI	ACNGT	2 cut(s)	334, 440
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	6 cut(s)	144, 201, 289, 293, 356, 612
BstDEI	CTNAG	2 cut(s)	70, 399
BstF5I	GGATG	3 cut(s)	48, 55, 467
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	356, 358
BstKTI	GATC	2 cut(s)	258, 435
BstMAI	GTCTC	2 cut(s)	374, 584
BstMBI	GATC	2 cut(s)	255, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 212
BstNSI	RCATGY	1 cut(s)	203
BstSFI	CTRYAG	2 cut(s)	204, 210
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	4 cut(s)	190, 196, 218, 224
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	48, 55, 467
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	6 cut(s)	144, 201, 289, 293, 356, 612
CfoI	GCGC	2 cut(s)	356, 358
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	550
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	4 cut(s)	200, 250, 284, 377
CviJI	RGCY	9 cut(s)	29, 146, 209, 215, 233, 291, 305, 324, 610
CviKI_1	RGCY	9 cut(s)	29, 146, 209, 215, 233, 291, 305, 324, 610
DdeI	CTNAG	2 cut(s)	70, 399
DpnI	GATC	2 cut(s)	257, 434
DpnII	GATC	2 cut(s)	255, 432
EciI	GGCGGA	2 cut(s)	359, 553
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	4 cut(s)	203, 253, 287, 380
FaiI	YATR	7 cut(s)	201, 228, 251, 285, 378, 512, 585
FatI	CATG	4 cut(s)	199, 249, 283, 376
Fnu4HI	GCNGC	4 cut(s)	204, 207, 210, 213
FokI	GGATG	3 cut(s)	55, 62, 454
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	204, 207, 210, 213
FspBI	CTAG	3 cut(s)	312, 407, 482
GlaI	GCGC	2 cut(s)	355, 357
GluI	GCNGC	4 cut(s)	204, 207, 210, 213
GsaI	CCCAGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	2 cut(s)	356, 358
Hin1II	CATG	4 cut(s)	203, 253, 287, 380
Hin6I	GCGC	2 cut(s)	354, 356
HinP1I	GCGC	2 cut(s)	354, 356
HinfI	GANTC	2 cut(s)	403, 419
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	91, 428, 442
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	463, 520
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	334, 440
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	199, 206, 212, 380, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 212
HpyF3I	CTNAG	2 cut(s)	70, 399
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	203, 253, 287, 380
HspAI	GCGC	2 cut(s)	354, 356
Kzo9I	GATC	2 cut(s)	255, 432
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	124, 160, 201, 249, 273, 291, 309
Lsp1109I	GCAGC	4 cut(s)	190, 196, 218, 224
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	312, 407, 482
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	257, 434
MboI	GATC	2 cut(s)	255, 432
MboII	GAAGA	3 cut(s)	103, 265, 328
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	6 cut(s)	94, 220, 446, 528, 545, 624
MmeI	TCCRAC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	3 cut(s)	81, 360, 623
MspA1I	CMGCKG	2 cut(s)	209, 215
MspI	CCGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	209, 212
NdeII	GATC	2 cut(s)	255, 432
NlaIII	CATG	4 cut(s)	203, 253, 287, 380
NlaIV	GGNNCC	2 cut(s)	67, 325
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	203
PauI	GCGCGC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	403, 419
PkrI	GCNGC	4 cut(s)	205, 208, 211, 214
PpuMI	RGGWCCY	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	67, 325
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	2 cut(s)	208, 214
PsuI	RGATCY	1 cut(s)	255
PteI	GCGCGC	1 cut(s)	354
PvuII	CAGCTG	2 cut(s)	209, 215
SacI	GAGCTC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	81, 360, 623
SatI	GCNGC	4 cut(s)	204, 207, 210, 213
Sau3AI	GATC	2 cut(s)	255, 432
Sau96I	GGNCC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	7 cut(s)	104, 174, 211, 217, 235, 429, 612
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	204, 210
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	66
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	6 cut(s)	94, 220, 446, 528, 545, 624
SsiI	CCGC	2 cut(s)	344, 538
SspMI	CTAG	3 cut(s)	312, 407, 482
SstI	GAGCTC	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	334, 440
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	89, 435, 616
TasI	AATT	6 cut(s)	94, 220, 446, 528, 545, 624
TfiI	GAWTC	2 cut(s)	403, 419
Tru1I	TTAA	3 cut(s)	81, 360, 623
Tru9I	TTAA	3 cut(s)	81, 360, 623
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	4 cut(s)	203, 206, 209, 212
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	17, 266
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	4 cut(s)	94, 220, 446, 528
XceI	RCATGY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	312, 407, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.