Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

9366545 .. 9367234

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGGTGCATGCTGCAGCTGCAGCTGAGAATTCTTATAGAGCTCACAATCCTACTCACATGAAGTGCCCTGTTGGCAACTATAGGCTGATCAGGTGGCTTCCCCCTCTGGAGAACAAATTCGAACTTAATTTTGATGGCTCTGTGAAGCATGATGGGATGGCTGTAGCTGGTTTTGTCATTAGAAACCATTCTGGCTCCCCGGTGGTGGCTGGAACTAGGAAGATCGGCTCTACTGCTGTTCTTGTGGCGGAGTATACCGTGCTCAAAGATGGTCTCCTCCATGCGTTGCATCTCAACTGCTCTAACATTCTAGTAGAGGGTGATTCAAAGCTGGTGATCGACTGTGTTAACAAGATTAGTGACCCTCCTTGGAAAATTCGTTCTCTTGTTCGTGACATCCACCAAGACATCTCTAGTATGTTTGAGGAAATCTCTTTCTATCATATTCCTCATGAAGCAAACCTTGTTGCTGACGCAATTGCCTCCCTTGGTCATCAATCTCCGGATGTGATTATATGGCGAGACAAACTTCCTCTTTTAGCTTGCTCGGCTTTTAATTTAACCAATTTAATTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

194

Amino Acids

21.38

Weight (kDa)

6.58

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	44 - 163	6.5e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	31, 119, 378
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	330
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	6 cut(s)	20, 26, 44, 170, 334, 545
AluI	AGCT	6 cut(s)	20, 26, 44, 170, 334, 545
Alw21I	GWGCWC	2 cut(s)	46, 267
Alw26I	GTCTC	2 cut(s)	281, 519
Aor13HI	TCCGGA	1 cut(s)	505
ApeKI	GCWGC	4 cut(s)	14, 17, 20, 23
ApoI	RAATTY	3 cut(s)	31, 119, 378
Asp700I	GAANNNNTTC	2 cut(s)	119, 190
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	335, 349
AsuII	TTCGAA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	46, 267
BbvI	GCAGC	3 cut(s)	7, 29, 35
BccI	CCATC	4 cut(s)	131, 149, 154, 266
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	281, 519
BfaI	CTAG	3 cut(s)	219, 314, 417
BfmI	CTRYAG	4 cut(s)	15, 21, 82, 165
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	4 cut(s)	15, 18, 21, 24
BlsI	GCNGC	4 cut(s)	16, 19, 22, 25
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	201, 371, 490
BsaWI	WCCGGW	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	3 cut(s)	201, 371, 490
BseGI	GGATG	3 cut(s)	165, 399, 514
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	7, 29, 35
BsiHKAI	GWGCWC	2 cut(s)	46, 267
BsiSI	CCGG	2 cut(s)	203, 506
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	281, 519
Bso31I	GGTCTC	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	3 cut(s)	46, 71, 267
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	90, 225, 339
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	2 cut(s)	19, 25
BspT104I	TTCGAA	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	201, 371, 490
BssMI	GATC	3 cut(s)	90, 225, 339
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	371, 490
Bst1107I	GTATAC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	262, 347
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	12, 547
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	165, 399, 514
BstKTI	GATC	3 cut(s)	93, 228, 342
BstMAI	GTCTC	2 cut(s)	281, 519
BstMBI	GATC	3 cut(s)	90, 225, 339
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 23, 75, 551
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	4 cut(s)	15, 21, 82, 165
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	7, 29, 35
BstZ17I	GTATAC	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	165, 399, 514
Cac8I	GCNNGC	2 cut(s)	12, 547
CciI	TCATGA	1 cut(s)	454
CseI	GACGC	1 cut(s)	485
CviAII	CATG	5 cut(s)	11, 61, 152, 284, 455
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	3 cut(s)	92, 227, 341
DpnII	GATC	3 cut(s)	90, 225, 339
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	371, 490
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	371, 490
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	371, 490
FaeI	CATG	5 cut(s)	14, 64, 155, 287, 458
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	5 cut(s)	10, 60, 151, 283, 454
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	15, 18, 21, 24
FokI	GGATG	3 cut(s)	172, 386, 521
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	15, 18, 21, 24
FspBI	CTAG	3 cut(s)	219, 314, 417
GluI	GCNGC	4 cut(s)	15, 18, 21, 24
GsuI	CTGGAG	1 cut(s)	131
HapII	CCGG	2 cut(s)	203, 506
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	5 cut(s)	14, 64, 155, 287, 458
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	326
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	203, 506
HphI	GGTGA	2 cut(s)	335, 349
Hpy166II	GTNNAC	2 cut(s)	258, 352
Hpy188III	TCNNGA	4 cut(s)	110, 395, 455, 506
Hpy8I	GTNNAC	2 cut(s)	258, 352
HpyCH4III	ACNGT	2 cut(s)	262, 347
HpyCH4V	TGCA	4 cut(s)	10, 17, 23, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 23, 75, 551
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	14, 64, 155, 287, 458
Kpn2I	TCCGGA	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	90, 225, 339
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	9 cut(s)	79, 84, 95, 156, 180, 198, 216, 320, 519
Lsp1109I	GCAGC	3 cut(s)	7, 29, 35
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	219, 314, 417
MaeIII	GTNAC	2 cut(s)	362, 395
MalI	GATC	3 cut(s)	92, 227, 341
MboI	GATC	3 cut(s)	90, 225, 339
MboII	GAAGA	1 cut(s)	235
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	3 cut(s)	46, 71, 267
MluCI	AATT	8 cut(s)	31, 119, 130, 378, 480, 559, 568, 573
MnlI	CCTC	8 cut(s)	117, 290, 313, 378, 421, 462, 496, 546
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	2 cut(s)	119, 190
MseI	TTAA	5 cut(s)	129, 351, 558, 563, 572
MspA1I	CMGCKG	2 cut(s)	20, 26
MspI	CCGG	2 cut(s)	203, 506
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	20, 23, 75, 551
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	90, 225, 339
NlaIII	CATG	5 cut(s)	14, 64, 155, 287, 458
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	2 cut(s)	362, 395
NspI	RCATGY	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	14
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	119, 190
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	16, 19, 22, 25
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	199
PstI	CTGCAG	2 cut(s)	19, 25
PvuII	CAGCTG	2 cut(s)	20, 26
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	129, 351, 558, 563, 572
SatI	GCNGC	4 cut(s)	15, 18, 21, 24
Sau3AI	GATC	3 cut(s)	90, 225, 339
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	46, 71, 267
SetI	ASST	8 cut(s)	22, 28, 46, 98, 172, 336, 468, 547
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	4 cut(s)	15, 21, 82, 165
SfuI	TTCGAA	1 cut(s)	123
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	8 cut(s)	31, 119, 130, 378, 480, 559, 568, 573
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	219, 314, 417
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	371, 490
TaaI	ACNGT	2 cut(s)	262, 347
TaqI	TCGA	2 cut(s)	123, 342
TasI	AATT	8 cut(s)	31, 119, 130, 378, 480, 559, 568, 573
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	5 cut(s)	129, 351, 558, 563, 572
Tru9I	TTAA	5 cut(s)	129, 351, 558, 563, 572
TseFI	GTSAC	2 cut(s)	362, 395
TseI	GCWGC	4 cut(s)	14, 17, 20, 23
Tsp45I	GTSAC	2 cut(s)	362, 395
TspDTI	ATGAA	2 cut(s)	77, 471
XapI	RAATTY	3 cut(s)	31, 119, 378
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	2 cut(s)	119, 190
XspI	CTAG	3 cut(s)	219, 314, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.