Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000358.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

126280 .. 128119

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000358.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgtggatgcggtttggtgatttcactggtggtaggattcaggatttccagcatagggttaggtggaggaaacacagttacccaagcactttggttcaagtgcgaccgagccacgttattgtgggtatgtttgaacccatgagttcttttcatgggctaggtgggttttctacttatgggatggaggacaatttggttggattgttaagatgggattctaatgggaggcttatcctagctggtacccgtaagattggtgtcacttcagtacctattgctgagggctgtgctcttaaaaatggtctcatccatgctctttgtcaaaacatcaaaagaattcaagttgagggtgactcactcttcatcatcaactgtattaatcgagcttgtgccacgccttggagaatcagatcattgatctctgacataatctggcttgctgcgaaatttgaggtcatttccttctcccatatcttcggcgaggccaatttcgttgcatatgtcatcacttcgacgggtcataatctttctactcccaagatttgggtcggttccattctggatgcggcatcgtctgccctacttctagattctattaaccttggttgtccaatgggtttcttgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

209

Amino Acids

23.17

Weight (kDa)

9.14

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	2 cut(s)	399, 543
AciI	CCGC	2 cut(s)	10, 566
AcsI	RAATTY	2 cut(s)	336, 446
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	244, 270
AfiI	CCNNNNNNNGG	3 cut(s)	55, 399, 543
AgsI	TTSAA	3 cut(s)	98, 134, 341
AluBI	AGCT	2 cut(s)	239, 386
AluI	AGCT	2 cut(s)	239, 386
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	336, 446
AseI	ATTAAT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	29, 362
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BanI	GGYRCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	2 cut(s)	175, 204
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	158, 236, 587
BisI	GCNGC	2 cut(s)	441, 567
BlsI	GCNGC	2 cut(s)	442, 568
BmiI	GGNNCC	2 cut(s)	244, 553
BmsI	GCATC	2 cut(s)	553, 578
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bpu10I	CCTNAGC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	398, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 399, 543
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	398, 601
BseGI	GGATG	4 cut(s)	12, 186, 306, 568
BseLI	CCNNNNNNNGG	3 cut(s)	55, 399, 543
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	292
BslI	CCNNNNNNNGG	3 cut(s)	55, 399, 543
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	410, 417
BspACI	CCGC	2 cut(s)	10, 566
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	244, 553
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	398, 601
BssMI	GATC	2 cut(s)	410, 417
BssT1I	CCWWGG	2 cut(s)	398, 601
Bst4CI	ACNGT	2 cut(s)	77, 374
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	4 cut(s)	12, 186, 306, 568
BstKTI	GATC	2 cut(s)	413, 420
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	410, 417
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstV1I	GCAGC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	4 cut(s)	12, 186, 306, 568
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	243, 269
CviAII	CATG	3 cut(s)	139, 152, 311
CviJI	RGCY	8 cut(s)	111, 157, 229, 239, 285, 386, 436, 485
CviKI_1	RGCY	8 cut(s)	111, 157, 229, 239, 285, 386, 436, 485
CviQI	GTAC	2 cut(s)	243, 269
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	412, 419
DpnII	GATC	2 cut(s)	410, 417
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	398, 601
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	398, 601
ErhI	CCWWGG	2 cut(s)	398, 601
FaeI	CATG	3 cut(s)	142, 155, 314
FatI	CATG	3 cut(s)	138, 151, 310
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	441, 567
FokI	GGATG	4 cut(s)	19, 193, 293, 575
Fsp4HI	GCNGC	2 cut(s)	441, 567
FspBI	CTAG	3 cut(s)	158, 236, 587
GluI	GCNGC	2 cut(s)	441, 567
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	3 cut(s)	142, 155, 314
HinfI	GANTC	5 cut(s)	37, 215, 353, 405, 590
HphI	GGTGA	2 cut(s)	29, 362
Hpy188I	TCNGA	2 cut(s)	410, 424
Hpy188III	TCNNGA	3 cut(s)	41, 560, 587
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	2 cut(s)	77, 374
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	142, 155, 314
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	410, 417
LpnPI	CCDG	6 cut(s)	12, 26, 62, 225, 418, 545
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	553, 578
MaeI	CTAG	3 cut(s)	158, 236, 587
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	77, 259, 350
MalI	GATC	2 cut(s)	412, 419
MboI	GATC	2 cut(s)	410, 417
MboII	GAAGA	2 cut(s)	352, 466
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	4 cut(s)	190, 336, 446, 487
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	7 cut(s)	60, 178, 219, 274, 340, 445, 475
MseI	TTAA	4 cut(s)	206, 294, 378, 597
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	2 cut(s)	410, 417
NlaIII	CATG	3 cut(s)	142, 155, 314
NlaIV	GGNNCC	2 cut(s)	244, 553
NmuCI	GTSAC	2 cut(s)	259, 350
PfeI	GAWTC	4 cut(s)	37, 215, 405, 590
PflMI	CCANNNNNTGG	2 cut(s)	399, 543
PkrI	GCNGC	2 cut(s)	442, 568
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	244, 553
RsaI	GTAC	2 cut(s)	244, 270
RsaNI	GTAC	2 cut(s)	243, 269
SaqAI	TTAA	4 cut(s)	206, 294, 378, 597
SatI	GCNGC	2 cut(s)	441, 567
Sau3AI	GATC	2 cut(s)	410, 417
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	65, 117, 163, 241, 274, 388, 456, 603
SfaNI	GCATC	2 cut(s)	553, 578
Sse9I	AATT	4 cut(s)	190, 336, 446, 487
SsiI	CCGC	2 cut(s)	10, 566
SspMI	CTAG	3 cut(s)	158, 236, 587
StyI	CCWWGG	2 cut(s)	398, 601
TaaI	ACNGT	2 cut(s)	77, 374
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	382, 512
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	190, 336, 446, 487
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	4 cut(s)	37, 215, 405, 590
Tru1I	TTAA	4 cut(s)	206, 294, 378, 597
Tru9I	TTAA	4 cut(s)	206, 294, 378, 597
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	2 cut(s)	259, 350
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	2 cut(s)	259, 350
TspDTI	ATGAA	2 cut(s)	140, 352
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	2 cut(s)	399, 543
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	336, 446
XbaI	TCTAGA	1 cut(s)	586
XspI	CTAG	3 cut(s)	158, 236, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.