Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

31257 .. 31643

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgatggtgcatgctgcaactgcagctgggaattcctatagagctcaaaatccttcccacatgaagagctatgttcaagtggcttcccccctcggagaacaattcaaactcaattttgatggctatgtgaagcatgacaggatggctgtagctggttttgtcattagaaaccatgctggctcacctgtggtggctggaactaggaagattggctccactattgttcttgtggcggcgtgtagcgcgctcaaaaatggtctcctccatgcgctgcatctcaactgctctaagattctagtggagggtgattcaaagctggtgatcgactgtgttaacaagattagtgactctccttggaaaattcgttctcttgttcgtgacatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

128

Amino Acids

13.8

Weight (kDa)

9.62

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	31, 360
AgsI	TTSAA	3 cut(s)	77, 106, 312
AloI	GAACNNNNNNTCC	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	26, 44, 69, 152, 316
AluI	AGCT	5 cut(s)	26, 44, 69, 152, 316
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	14, 23, 271
ApoI	RAATTY	2 cut(s)	31, 360
AspLEI	GCGC	3 cut(s)	245, 247, 271
AsuHPI	GGTGA	3 cut(s)	174, 317, 331
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	35, 258
BccI	CCATC	2 cut(s)	113, 136
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	201, 296
BfmI	CTRYAG	3 cut(s)	21, 37, 147
BisI	GCNGC	4 cut(s)	15, 24, 234, 272
BlsI	GCNGC	4 cut(s)	16, 25, 235, 273
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	91, 353
BseDI	CCNNGG	2 cut(s)	91, 353
BseGI	GGATG	1 cut(s)	147
BsePI	GCGCGC	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	35, 258
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	91, 353
BssHII	GCGCGC	1 cut(s)	243
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	12, 178, 245
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	3 cut(s)	245, 247, 271
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 23, 242
BstNSI	RCATGY	1 cut(s)	14
BstSFI	CTRYAG	3 cut(s)	21, 37, 147
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	35, 258
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	12, 178, 245
CfoI	GCGC	3 cut(s)	245, 247, 271
CviAII	CATG	5 cut(s)	11, 61, 134, 173, 266
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	5 cut(s)	14, 64, 137, 176, 269
FaiI	YATR	8 cut(s)	12, 39, 62, 72, 126, 135, 174, 267
FatI	CATG	5 cut(s)	10, 60, 133, 172, 265
Fnu4HI	GCNGC	4 cut(s)	15, 24, 234, 272
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	15, 24, 234, 272
FspBI	CTAG	2 cut(s)	201, 296
GlaI	GCGC	3 cut(s)	244, 246, 270
GluI	GCNGC	4 cut(s)	15, 24, 234, 272
GsaI	CCCAGC	1 cut(s)	30
HhaI	GCGC	3 cut(s)	245, 247, 271
Hin1II	CATG	5 cut(s)	14, 64, 137, 176, 269
Hin6I	GCGC	3 cut(s)	243, 245, 269
HinP1I	GCGC	3 cut(s)	243, 245, 269
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	292, 308, 347
HpaI	GTTAAC	1 cut(s)	334
HphI	GGTGA	3 cut(s)	174, 317, 331
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	4 cut(s)	10, 17, 23, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 23, 242
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	14, 64, 137, 176, 269
HspAI	GCGC	3 cut(s)	243, 245, 269
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	321
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	7 cut(s)	12, 124, 138, 162, 180, 198, 302
Lsp1109I	GCAGC	2 cut(s)	35, 258
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	201, 296
MaeIII	GTNAC	2 cut(s)	344, 377
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	76, 217
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	31, 101, 112, 360
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	101, 272, 295
MseI	TTAA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	20, 23, 242
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	5 cut(s)	14, 64, 137, 176, 269
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	344, 377
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PauI	GCGCGC	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	292, 308
PkrI	GCNGC	4 cut(s)	16, 25, 235, 273
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	25
PteI	GCGCGC	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	4 cut(s)	15, 24, 234, 272
Sau3AI	GATC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	28, 46, 71, 154, 187, 318
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	3 cut(s)	21, 37, 147
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	4 cut(s)	31, 101, 112, 360
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	201, 296
SstI	GAGCTC	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	324
TasI	AATT	4 cut(s)	31, 101, 112, 360
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	292, 308
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	344, 377
TseI	GCWGC	3 cut(s)	14, 23, 271
Tsp45I	GTSAC	2 cut(s)	344, 377
TspDTI	ATGAA	1 cut(s)	77
XapI	RAATTY	2 cut(s)	31, 360
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	2 cut(s)	201, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.