Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

46359 .. 48954

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtggtggcgttgtcagaggacgccggatgacattgaaatcgccggatctagcttcgcggatcctggtcaggtcggcggcagaaaaggtcttgcagagggcagtgcagtcagagatggtctctaccatgccctcatcctccacttccgaaaagtcgtcgttgaaggtgattctaaactgataatagatgctatcaacgagaaatgcactattccttggaggctgagaaccctggtcaaagacatactcagcctcgcgaagcaaattttctggcggatgccattgcaaatacggcgcatggatcctctgctcgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

9.44

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 257
AciI	CCGC	3 cut(s)	59, 78, 274
AclWI	GGATC	5 cut(s)	55, 56, 69, 296, 309
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	38, 164
AjnI	CCWGG	2 cut(s)	64, 231
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	5 cut(s)	55, 56, 69, 296, 309
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	179
BamHI	GGATCC	2 cut(s)	61, 301
BauI	CACGAG	1 cut(s)	311
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	66, 233
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	66, 233
BmiI	GGNNCC	2 cut(s)	63, 303
BmrFI	CCNGG	2 cut(s)	66, 233
BmsI	GCATC	2 cut(s)	178, 267
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	215, 231
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	66, 233
BseDI	CCNNGG	2 cut(s)	215, 231
BseGI	GGATG	3 cut(s)	34, 135, 282
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	215, 262
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	59, 257
BsiSI	CCGG	2 cut(s)	26, 45
BsmAI	GTCTC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	47, 61, 301
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	3 cut(s)	59, 78, 274
BspCNI	CTCAG	2 cut(s)	216, 261
BspFNI	CGCG	2 cut(s)	59, 257
BspLI	GGNNCC	2 cut(s)	63, 303
BspPI	GGATC	5 cut(s)	55, 56, 69, 296, 309
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	215, 231
BssMI	GATC	3 cut(s)	47, 61, 301
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	66, 233
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	224, 248
BstF5I	GGATG	3 cut(s)	34, 135, 282
BstFNI	CGCG	2 cut(s)	59, 257
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	50, 64, 304
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	47, 61, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	66, 233
BstSCI	CCNGG	2 cut(s)	64, 231
BstUI	CGCG	2 cut(s)	59, 257
BstX2I	RGATCY	3 cut(s)	47, 61, 301
BstYI	RGATCY	3 cut(s)	47, 61, 301
BtsCI	GGATG	3 cut(s)	34, 135, 282
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
BtuMI	TCGCGA	1 cut(s)	257
CfoI	GCGC	1 cut(s)	297
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	128, 298
CviJI	RGCY	3 cut(s)	54, 223, 252
CviKI_1	RGCY	3 cut(s)	54, 223, 252
DdeI	CTNAG	2 cut(s)	224, 248
DpnI	GATC	3 cut(s)	49, 63, 303
DpnII	GATC	3 cut(s)	47, 61, 301
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	64, 231
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	2 cut(s)	131, 301
FaiI	YATR	3 cut(s)	129, 245, 299
FatI	CATG	2 cut(s)	127, 297
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	3 cut(s)	41, 122, 289
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	79
HapII	CCGG	2 cut(s)	26, 45
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	131, 301
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	26, 45
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	18, 113, 149
Hpy188III	TCNNGA	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	95, 107, 207, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	224, 248
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	131, 301
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	47, 61, 301
LpnPI	CCDG	8 cut(s)	39, 51, 56, 58, 78, 218, 245, 256
LweI	GCATC	2 cut(s)	178, 267
MaeI	CTAG	1 cut(s)	51
MalI	GATC	3 cut(s)	49, 63, 303
MboI	GATC	3 cut(s)	47, 61, 301
MflI	RGATCY	3 cut(s)	47, 61, 301
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	7 cut(s)	12, 91, 143, 149, 213, 263, 315
MspI	CCGG	2 cut(s)	26, 45
MspR9I	CCNGG	2 cut(s)	66, 233
MvaI	CCWGG	2 cut(s)	66, 233
MvnI	CGCG	2 cut(s)	59, 257
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	3 cut(s)	47, 61, 301
NlaIII	CATG	2 cut(s)	131, 301
NlaIV	GGNNCC	2 cut(s)	63, 303
NruI	TCGCGA	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	64, 231
PspGI	CCWGG	2 cut(s)	64, 231
PspN4I	GGNNCC	2 cut(s)	63, 303
PsuI	RGATCY	3 cut(s)	47, 61, 301
RruI	TCGCGA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	3 cut(s)	47, 61, 301
ScrFI	CCNGG	2 cut(s)	66, 233
SetI	ASST	4 cut(s)	56, 75, 91, 169
SfaNI	GCATC	2 cut(s)	178, 267
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	3 cut(s)	59, 78, 274
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	64, 231
StyI	CCWWGG	1 cut(s)	215
TasI	AATT	1 cut(s)	264
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	109
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.