Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

14417908 .. 14419425

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTCAGAGCTGCCTGTTGCTCCTGCTAATAGTGTTAATGGCCCCTCTGTTGCTCTTGCTTCAAAAGTTGTTGAAATCATCCGTTGGATCCCTCCTGCTCCAAATTGGGTGAAGCTCAACTTTGATGGGTCTGTCCTCTCCACCTCTGGTGCTGCTGGCTTTGTTATTAGAGACTCTTTTGGGGTTCCCTTAGTTGCTGGTGCACGTAGACTCCATACTTCCAGTGTTCCAATTACTGAGTGTTGTGCTCTTAAAGATGGTCTCGTTGCTGCCAAAAGAGATGTCATTCATGTTGCTAGTGAGTTTGATAATATCAGCTTTGGTCATGCATTTCAAGAAGCCAATTTCTTGGCTGATGCTCTTGCAAATCTCGAGCACAATTTCCATTCTCTGAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

135

Amino Acids

14.19

Weight (kDa)

6.17

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	85, 98
AgsI	TTSAA	3 cut(s)	66, 77, 338
AluBI	AGCT	3 cut(s)	13, 118, 321
AluI	AGCT	3 cut(s)	13, 118, 321
Alw21I	GWGCWC	3 cut(s)	208, 253, 381
Alw26I	GTCTC	2 cut(s)	168, 269
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	85, 98
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	13, 155, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	208, 253, 381
BbvI	GCAGC	2 cut(s)	142, 259
BccI	CCATC	2 cut(s)	122, 254
BcoDI	GTCTC	2 cut(s)	168, 269
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	3 cut(s)	14, 156, 273
BlsI	GCNGC	3 cut(s)	15, 157, 274
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	46, 92, 189
BmsI	GCATC	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	142, 259
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	3 cut(s)	208, 253, 381
BsiHKCI	CYCGRG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	168, 269
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	208, 253, 381
Bsp143I	GATC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	46, 92, 189
BspPI	GGATC	2 cut(s)	85, 98
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	193, 240
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	168, 269
BstMBI	GATC	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	142, 259
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	2 cut(s)	293, 329
CviJI	RGCY	8 cut(s)	5, 13, 45, 118, 162, 321, 344, 356
CviKI_1	RGCY	8 cut(s)	5, 13, 45, 118, 162, 321, 344, 356
DdeI	CTNAG	2 cut(s)	193, 240
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	334
FaeI	CATG	2 cut(s)	296, 332
FaiI	YATR	3 cut(s)	219, 294, 330
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	292, 328
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	14, 156, 273
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	14, 156, 273
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	3 cut(s)	14, 156, 273
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	296, 332
HinfI	GANTC	2 cut(s)	176, 213
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	206, 212
Hpy188I	TCNGA	2 cut(s)	10, 396
Hpy188III	TCNNGA	2 cut(s)	338, 374
Hpy8I	GTNNAC	2 cut(s)	206, 212
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	206, 332, 368
HpyF3I	CTNAG	2 cut(s)	193, 240
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	296, 332
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	28, 106
LpnPI	CCDG	7 cut(s)	30, 39, 111, 135, 144, 186, 238
Lsp1109I	GCAGC	2 cut(s)	142, 259
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	208
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	3 cut(s)	208, 253, 381
MluCI	AATT	4 cut(s)	106, 234, 346, 382
MlyI	GAGTC	2 cut(s)	170, 207
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	58, 105, 149, 157
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	2 cut(s)	39, 255
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	296, 332
NlaIV	GGNNCC	3 cut(s)	46, 92, 189
NsiI	ATGCAT	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	15, 157, 274
PleI	GAGTC	2 cut(s)	170, 207
PpsI	GAGTC	2 cut(s)	170, 207
Ppu21I	YACGTR	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	46, 92, 189
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	39, 255
SatI	GCNGC	3 cut(s)	14, 156, 273
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	170, 207
SduI	GDGCHC	3 cut(s)	208, 253, 381
SetI	ASST	5 cut(s)	15, 120, 149, 211, 323
SfaNI	GCATC	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	106, 234, 346, 382
SspMI	CTAG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	106, 234, 346, 382
Tru1I	TTAA	2 cut(s)	39, 255
Tru9I	TTAA	2 cut(s)	39, 255
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	13, 155, 272
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.