Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005608.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

63557 .. 64620

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005608.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgccctggatctcggatccttgtcggctgccatggttttttcttggtcttgttggtggagagaatgatgcttgtgtgagggatctcatcccattgaacttcaccaaactcaattttaacggctcggttaaccacaatagaagcgttgcaactaactttgttataaggaatcatgatggctctcctatcgttgctggcaccagaaatattggtgtctcctctgttctcgtagctgaatgcagtactcttaaagatggccttctcaaggcagtccagtacaactgctccagaattattataaaaggtgactccaagctggttattgattgcattaacaaaatttttgaccctcggcaaatccgtttgttaaacagagacatccagagttccagactattgctacactctttgaagaaatctcctttcggcatatttagaaatctgtggcatgttcaccgggagacatccagagtaagatgccgagaaacaagaaagatctacgactacagcaagaagcctagcccgtggggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

177

Amino Acids

20.19

Weight (kDa)

9.94

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	164, 299
AccB1I	GGYRCC	1 cut(s)	197
AclWI	GGATC	4 cut(s)	11, 17, 24, 90
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	2 cut(s)	244, 278
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	97, 412
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	233, 316
AluI	AGCT	2 cut(s)	233, 316
Alw26I	GTCTC	3 cut(s)	220, 369, 455
AlwI	GGATC	4 cut(s)	11, 17, 24, 90
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	94, 317, 446
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	170, 248
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	3 cut(s)	220, 369, 455
BfaI	CTAG	2 cut(s)	519, 532
BfmI	CTRYAG	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	7, 458
BmiI	GGNNCC	2 cut(s)	18, 199
BmrFI	CCNGG	2 cut(s)	7, 458
BmsI	GCATC	2 cut(s)	58, 467
BpmI	CTGGAG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	5, 32, 350, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	4 cut(s)	5, 32, 350, 524
BseGI	GGATG	3 cut(s)	87, 378, 464
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	3 cut(s)	220, 369, 455
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	9, 16, 82, 495
Bsp19I	CCATGG	1 cut(s)	32
BspANI	GGCC	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	18, 199
BspPI	GGATC	4 cut(s)	11, 17, 24, 90
BspT107I	GGYRCC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	4 cut(s)	5, 32, 350, 524
BssMI	GATC	4 cut(s)	9, 16, 82, 495
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	2 cut(s)	32, 524
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	87, 378, 464
BstKTI	GATC	4 cut(s)	12, 19, 85, 498
BstMAI	GTCTC	3 cut(s)	220, 369, 455
BstMBI	GATC	4 cut(s)	9, 16, 82, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	5, 456
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	15
BstX2I	RGATCY	4 cut(s)	9, 16, 82, 495
BstYI	RGATCY	4 cut(s)	9, 16, 82, 495
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	2 cut(s)	32, 524
BtsCI	GGATG	3 cut(s)	87, 378, 464
Cac8I	GCNNGC	1 cut(s)	196
CciI	TCATGA	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	243, 277
CviAII	CATG	3 cut(s)	33, 173, 449
CviJI	RGCY	9 cut(s)	28, 123, 180, 233, 258, 316, 517, 522, 531
CviKI_1	RGCY	9 cut(s)	28, 123, 180, 233, 258, 316, 517, 522, 531
CviQI	GTAC	2 cut(s)	243, 277
DpnI	GATC	4 cut(s)	11, 18, 84, 497
DpnII	GATC	4 cut(s)	9, 16, 82, 495
Eco130I	CCWWGG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	3 cut(s)	36, 176, 452
FaiI	YATR	6 cut(s)	34, 164, 174, 299, 431, 450
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	3 cut(s)	32, 172, 448
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	3 cut(s)	74, 365, 451
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	519, 532
GluI	GCNGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	3 cut(s)	36, 176, 452
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	169, 308
HpaI	GTTAAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	3 cut(s)	94, 317, 446
Hpy166II	GTNNAC	2 cut(s)	130, 454
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	5 cut(s)	173, 288, 382, 390, 468
Hpy8I	GTNNAC	2 cut(s)	130, 454
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	149, 240, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
Hsp92II	CATG	3 cut(s)	36, 176, 452
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	9, 16, 82, 495
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	2 cut(s)	58, 467
MaeI	CTAG	2 cut(s)	519, 532
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	11, 18, 84, 497
MboI	GATC	4 cut(s)	9, 16, 82, 495
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	4 cut(s)	9, 16, 82, 495
MluCI	AATT	3 cut(s)	112, 291, 339
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	72, 229, 360
MseI	TTAA	5 cut(s)	117, 129, 249, 333, 368
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	7, 458
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	528
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	4 cut(s)	9, 16, 82, 495
NlaIII	CATG	3 cut(s)	36, 176, 452
NlaIV	GGNNCC	2 cut(s)	18, 199
NmeAIII	GCCGAG	2 cut(s)	331, 506
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	452
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PsiI	TTATAA	2 cut(s)	164, 299
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	18, 199
PsuI	RGATCY	4 cut(s)	9, 16, 82, 495
RsaI	GTAC	2 cut(s)	244, 278
RsaNI	GTAC	2 cut(s)	243, 277
SaqAI	TTAA	5 cut(s)	117, 129, 249, 333, 368
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	9, 16, 82, 495
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	7, 458
SetI	ASST	3 cut(s)	235, 307, 318
SfaNI	GCATC	2 cut(s)	58, 467
SfcI	CTRYAG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	112, 291, 339
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	519, 532
StyD4I	CCNGG	2 cut(s)	5, 456
StyI	CCWWGG	1 cut(s)	32
TasI	AATT	3 cut(s)	112, 291, 339
TatI	WGTACW	2 cut(s)	242, 276
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	5 cut(s)	117, 129, 249, 333, 368
Tru9I	TTAA	5 cut(s)	117, 129, 249, 333, 368
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	519, 532
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.