Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000127.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

144596 .. 145132

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000127.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggctaatctgaatcagagtcctactacctttaattgttttgatgattggattgtttacatgtttcagaatgcaccaatggatgttttggaaaattgtttgcttctttgttggcaaatatggaaacagcgtaatgatgttttgttcagggactcggagttcagtccggcttctgtagtgcatgctttagcctccttttgtgctgcctacaggacccataacccccgttctgctactacttccattggcttaagtgaagtcattaaatggcacccgccgcctgaaaattttgtcaagctcaactttcaggggtttgtttcttcttccaacctggctgccgcgggctttgttattagaaaccactttggtgaccctatttttgctggttcgaggtcaattggatcttcaacagttcctttggctgtatgtacagctcttaaggatggcttgttagctgctaagcgattcaacctggaccatatgggtgactcgtccctaatcatcaactctgtcaaccgcaagtgtgaagctccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

6.94

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	1 cut(s)	341
AciI	CCGC	5 cut(s)	275, 278, 339, 341, 517
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	430
AflII	CTTAAG	2 cut(s)	250, 437
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	408, 469
AjnI	CCWGG	2 cut(s)	330, 471
AleI	CACNNNNGTG	1 cut(s)	366
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	298, 434, 455, 530
AluI	AGCT	4 cut(s)	298, 434, 455, 530
AlwI	GGATC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	203, 335, 455
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspS9I	GGNCC	2 cut(s)	213, 475
AsuHPI	GGTGA	2 cut(s)	380, 497
AvaII	GGWCC	2 cut(s)	213, 475
BanI	GGYRCC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	190, 322, 442
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	2 cut(s)	332, 473
BfaI	CTAG	1 cut(s)	535
BfmI	CTRYAG	2 cut(s)	174, 208
BfrI	CTTAAG	2 cut(s)	250, 437
BisI	GCNGC	5 cut(s)	204, 278, 336, 339, 456
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	5 cut(s)	205, 279, 337, 340, 457
Bme1390I	CCNGG	2 cut(s)	332, 473
Bme18I	GGWCC	2 cut(s)	213, 475
BmgT120I	GGNCC	2 cut(s)	213, 475
BmiI	GGNNCC	2 cut(s)	215, 272
BmrFI	CCNGG	2 cut(s)	332, 473
Bpu1102I	GCTNAGC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	332, 473
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	88, 448
BseXI	GCAGC	3 cut(s)	190, 322, 442
Bsh1236I	CGCG	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	164, 478
BsmFI	GGGAC	2 cut(s)	164, 478
BsmI	GAATGC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	401
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	5 cut(s)	275, 278, 339, 341, 517
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	215, 272
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	270
BspTI	CTTAAG	2 cut(s)	250, 437
BsrGI	TGTACA	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	332, 473
Bst4CI	ACNGT	1 cut(s)	412
BstAFI	CTTAAG	2 cut(s)	250, 437
BstAUI	TGTACA	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	183, 343
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	88, 448
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	332, 473
BstNSI	RCATGY	2 cut(s)	64, 185
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	330, 471
BstSFI	CTRYAG	2 cut(s)	174, 208
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	190, 322, 442
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	88, 448
Cac8I	GCNNGC	2 cut(s)	183, 343
Cfr13I	GGNCC	2 cut(s)	213, 475
Cfr42I	CCGCGG	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	2 cut(s)	61, 182
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	213, 475
Eco91I	GGTNACC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	330, 471
FaeI	CATG	2 cut(s)	64, 185
FaiI	YATR	7 cut(s)	62, 121, 183, 219, 427, 480, 482
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 431, 463
FaqI	GGGAC	2 cut(s)	164, 478
FatI	CATG	2 cut(s)	60, 181
FauI	CCCGC	2 cut(s)	282, 334
FauNDI	CATATG	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	204, 278, 336, 339, 456
FokI	GGATG	2 cut(s)	95, 455
Fsp4HI	GCNGC	5 cut(s)	204, 278, 336, 339, 456
FspBI	CTAG	1 cut(s)	535
GluI	GCNGC	5 cut(s)	204, 278, 336, 339, 456
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	64, 185
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	13, 19, 152, 465, 488
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	2 cut(s)	380, 497
Hpy166II	GTNNAC	2 cut(s)	58, 514
Hpy188I	TCNGA	4 cut(s)	12, 18, 69, 157
Hpy8I	GTNNAC	2 cut(s)	58, 514
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	74, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	64, 185
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	3 cut(s)	190, 322, 442
MaeI	CTAG	1 cut(s)	535
MaeIII	GTNAC	2 cut(s)	368, 485
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	312, 315, 396
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	4 cut(s)	34, 94, 286, 396
MlyI	GAGTC	3 cut(s)	28, 146, 482
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	2 cut(s)	202, 384
MseI	TTAA	4 cut(s)	33, 251, 264, 438
MslI	CAYNNNNRTG	2 cut(s)	366, 483
MspA1I	CMGCKG	1 cut(s)	341
MspCI	CTTAAG	2 cut(s)	250, 437
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	332, 473
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	332, 473
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	64, 185
NlaIV	GGNNCC	2 cut(s)	215, 272
NmuCI	GTSAC	2 cut(s)	368, 485
NspI	RCATGY	2 cut(s)	64, 185
OliI	CACNNNNGTG	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	185
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	13, 465
PkrI	GCNGC	5 cut(s)	205, 279, 337, 340, 457
PleI	GAGTC	3 cut(s)	27, 146, 482
PpsI	GAGTC	3 cut(s)	27, 146, 482
PpuMI	RGGWCCY	1 cut(s)	213
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	330, 471
PspEI	GGTNACC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	330, 471
PspN4I	GGNNCC	2 cut(s)	215, 272
PspPI	GGNCC	2 cut(s)	213, 475
PspPPI	RGGWCCY	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	366, 483
SacII	CCGCGG	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	33, 251, 264, 438
SatI	GCNGC	5 cut(s)	204, 278, 336, 339, 456
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	2 cut(s)	213, 475
SchI	GAGTC	3 cut(s)	28, 146, 482
ScrFI	CCNGG	2 cut(s)	332, 473
SetI	ASST	8 cut(s)	32, 300, 333, 395, 436, 457, 474, 532
SfcI	CTRYAG	2 cut(s)	174, 208
Sfr303I	CCGCGG	1 cut(s)	342
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	213, 475
SmiMI	CAYNNNNRTG	2 cut(s)	366, 483
SmlI	CTYRAG	2 cut(s)	250, 437
SmoI	CTYRAG	2 cut(s)	250, 437
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	4 cut(s)	34, 94, 286, 396
SsiI	CCGC	5 cut(s)	275, 278, 339, 341, 517
SspMI	CTAG	1 cut(s)	535
StyD4I	CCNGG	2 cut(s)	330, 471
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	389
TasI	AATT	4 cut(s)	34, 94, 286, 396
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	2 cut(s)	280, 341
TfiI	GAWTC	2 cut(s)	13, 465
Tru1I	TTAA	4 cut(s)	33, 251, 264, 438
Tru9I	TTAA	4 cut(s)	33, 251, 264, 438
TseFI	GTSAC	2 cut(s)	368, 485
TseI	GCWGC	3 cut(s)	203, 335, 455
Tsp45I	GTSAC	2 cut(s)	368, 485
Vha464I	CTTAAG	2 cut(s)	250, 437
VpaK11BI	GGWCC	2 cut(s)	213, 475
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	2 cut(s)	64, 185
XspI	CTAG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.