FvH4_4g03801

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001617
Physical Location & Seq
Forward (+)
3365019 .. 3365675
657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03801.t1

Sequence Viewer

Length: 342 bp
ATGGATGATACCATTCATTGGTACCCGCCCGCTCTAAATTGGGTCAAGCTTAATTTTGATGGGTCTGTTACCTCATCGCCTGCTGCTACTGCTATTGGATTTGTTATTAGAGACAGTTTGGGGAACCCCTTAGTTGTTGGCGCTCTTTGTTTAAATGTCTTGAGTGTTTATGTGGCAGAATGTTGTGCCCTTAAAGATGGTCTCACGGGTGCCAAAAGATTCAACTACAAGTCCAATGTGGTTGAAGGTGACTCCCTCCTTACTGTCAATTGCGTCAACAGAAATTGTGATGTTCCTTGGCCTCTTAGACCCCACATTGGAGATGCTCTTCACAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

114

Amino Acids

12.24

Weight (kDa)

6.24

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 18 - 94 2.3e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 2 cut(s) 21, 209
AccB7I CCANNNNNTGG 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 2 cut(s) 26, 30
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 18, 317
AgsI TTSAA 2 cut(s) 223, 245
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 105, 206
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 190
BanI GGYRCC 2 cut(s) 21, 209
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 53, 191
BcoDI GTCTC 2 cut(s) 105, 206
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 23, 125, 211
BmsI GCATC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 317
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 18, 317
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 2 cut(s) 21, 209
BslI CCNNNNNNNGG 2 cut(s) 18, 317
BsmAI GTCTC 2 cut(s) 105, 206
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 190
BspACI CCGC 2 cut(s) 26, 30
BspANI GGCC 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 23, 125, 211
BspQI GCTCTTC 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 21, 209
BspTNI GGTCTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 116, 265
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 30, 81
BstDEI CTNAG 2 cut(s) 130, 305
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 105, 206
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 30, 81
CfoI GCGC 1 cut(s) 143
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 2 cut(s) 49, 301
CviKI_1 RGCY 2 cut(s) 49, 301
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 2 cut(s) 130, 305
DraI TTTAAA 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaiI YATR 1 cut(s) 171
FauI CCCGC 2 cut(s) 33, 37
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 301
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 219, 251
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 277
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 116, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 130, 305
HspAI GCGC 1 cut(s) 141
KpnI GGTACC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 333
LpnPI CCDG 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 67, 248
MbiI CCGCTC 1 cut(s) 32
MboII GAAGA 1 cut(s) 320
MfeI CAATTG 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 4 cut(s) 37, 52, 268, 283
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 82, 266, 312
MseI TTAA 3 cut(s) 51, 152, 192
MunI CAATTG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 23, 125, 211
NmuCI GTSAC 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 23, 125, 211
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 51, 152, 192
SatI GCNGC 1 cut(s) 84
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 190
SetI ASST 4 cut(s) 51, 74, 250, 339
SfaNI GCATC 1 cut(s) 313
SgeI CNNG 9 cut(s) 37, 41, 58, 92, 172, 217, 219, 241, 309
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 4 cut(s) 37, 52, 268, 283
SsiI CCGC 2 cut(s) 26, 30
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 116, 265
TasI AATT 4 cut(s) 37, 52, 268, 283
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 3 cut(s) 51, 152, 192
Tru9I TTAA 3 cut(s) 51, 152, 192
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 5
Van91I CCANNNNNTGG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.