Prupe.1G189700_v2.0.a1

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
17514724 .. 17515306
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G189700.1

Sequence Viewer

Length: 312 bp
ATGGCGAGGCCTTTAATTGCAGGAGCATTCCCGATTGGATATTCTTCAGTTCTACAAGCAGAGGCACTAGCTTTAAAGCAAGCCCTTATTTGGGCACAAAGACCAAATCTAAAGAGAATAGAAGTCGAAGGAGATTCTAAGATGCTGCAATCTATTGTCGGAGATATCCAAGAACTGCTACATCAATTTCATGAAGTCGGGATTGACCATATCTACCACAAAGCAAATACGGTGGCATATGAACTTTCTAAAAAGGGGCATACGGTTGACGCTAGTTGTATTTGGTTTGGAAACTTTCCTACCCACGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

6.57

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 90, 91
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 132
BfaI CTAG 2 cut(s) 68, 273
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmsI GCATC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 91
BseLI CCNNNNNNNGG 2 cut(s) 90, 91
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 90, 91
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 97
BspANI GGCC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 232, 265
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 190
CseI GACGC 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 10, 71, 83
CviKI_1 RGCY 3 cut(s) 10, 71, 83
DdeI CTNAG 1 cut(s) 138
DraI TTTAAA 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 10
Eco32I GATATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 166
FaeI CATG 1 cut(s) 194
FaiI YATR 5 cut(s) 192, 210, 238, 240, 261
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 2 cut(s) 68, 273
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 194
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 31, 191, 199
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 232, 265
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 20, 148
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 194
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 6
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 68, 273
MaeII ACGT 1 cut(s) 306
MboII GAAGA 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 15, 185
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 1 cut(s) 55
MseI TTAA 3 cut(s) 14, 74, 310
Mva1269I GAATGC 1 cut(s) 26
NdeI CATATG 1 cut(s) 238
NlaIII CATG 1 cut(s) 194
PagI TCATGA 1 cut(s) 190
PceI AGGCCT 1 cut(s) 10
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 14, 74, 310
SatI GCNGC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 97
SetI ASST 2 cut(s) 73, 309
SfaNI GCATC 1 cut(s) 132
Sse9I AATT 2 cut(s) 15, 185
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 2 cut(s) 68, 273
StuI AGGCCT 1 cut(s) 10
TaaI ACNGT 2 cut(s) 232, 265
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 15, 185
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 14, 74, 310
Tru9I TTAA 3 cut(s) 14, 74, 310
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 179, 207, 255
XspI CTAG 2 cut(s) 68, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.