Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000405.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

72792 .. 76237

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000405.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggagataacaaggactctcctcccttcctcctcttgctctagtctccaccaccgcactccgctcctccattttcacgtctcgccttcgcacccacagtcgttaccccaggatgtccttcagtctcagacctcactgcccattccatctcgcacccgcttccggaaacctctcgccgcctccgatggcaccacttccggctgggccttggcccatttgagaataaggcaagtgaacggtggccggtgggtggtgcctaaaaaggagcaaaaggagttcaactgcggcacgcaaagaggaacagcttttcaagcgacggggttcaatctggcttctgtagtgcatgcttcagcctccttttgtgctgcctacaggacccataatccccattttactgcttcttacaatagtttaagtgaagtcattaagtggcaccctctgcctgaaaactttgttaagctcaattttaatgggtcggtttctttgtcaaacttggctgctacgggatttgttatcagaaaccattttggtgaccccattgttgttggttcaagatctattggatcttccacagttcctatggctgaatgtacggctcttaaagatggctcgttagctgtgaagcggttcaaccttgaccatttactagtggagggtgactcggcccttattatcaactctgtcaacctcaagtgtgaagctccctggatgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

238

Amino Acids

26.01

Weight (kDa)

9.58

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	188, 253, 432
AccBSI	CCGCTC	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	6 cut(s)	55, 62, 157, 177, 285, 625
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	104, 333
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	2 cut(s)	162, 250
AgsI	TTSAA	5 cut(s)	280, 311, 325, 552, 631
AhlI	ACTAGT	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	108, 704
AluBI	AGCT	4 cut(s)	305, 460, 617, 701
AluI	AGCT	4 cut(s)	305, 460, 617, 701
Alw26I	GTCTC	3 cut(s)	50, 85, 129
AlwI	GGATC	1 cut(s)	571
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	4 cut(s)	204, 210, 241, 663
ApeKI	GCWGC	2 cut(s)	365, 497
Asp700I	GAANNNNTTC	1 cut(s)	626
AspS9I	GGNCC	4 cut(s)	204, 211, 375, 664
AsuHPI	GGTGA	2 cut(s)	542, 668
AvaII	GGWCC	1 cut(s)	375
BanI	GGYRCC	3 cut(s)	188, 253, 432
BbvI	GCAGC	2 cut(s)	352, 484
BccI	CCATC	3 cut(s)	154, 179, 599
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	2 cut(s)	110, 706
BcoDI	GTCTC	3 cut(s)	50, 85, 129
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	2 cut(s)	42, 647
BfmI	CTRYAG	2 cut(s)	336, 370
BglII	AGATCT	1 cut(s)	554
BisI	GCNGC	4 cut(s)	177, 286, 366, 498
BlsI	GCNGC	4 cut(s)	178, 287, 367, 499
Bme1390I	CCNGG	2 cut(s)	110, 706
Bme18I	GGWCC	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	4 cut(s)	204, 211, 375, 664
BmiI	GGNNCC	4 cut(s)	190, 255, 377, 434
BmrFI	CCNGG	2 cut(s)	110, 706
BplI	GAGNNNNNCTC	2 cut(s)	644, 676
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	108, 207, 704
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 250
Bse118I	RCCGGY	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	110, 706
BseDI	CCNNGG	3 cut(s)	108, 207, 704
BseGI	GGATG	2 cut(s)	118, 714
BseLI	CCNNNNNNNGG	2 cut(s)	162, 250
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	3 cut(s)	11, 22, 56
BseXI	GCAGC	2 cut(s)	352, 484
BseYI	CCCAGC	1 cut(s)	201
BshFI	GGCC	4 cut(s)	206, 212, 243, 665
BshNI	GGYRCC	3 cut(s)	188, 253, 432
BsiSI	CCGG	3 cut(s)	163, 198, 244
BslI	CCNNNNNNNGG	2 cut(s)	162, 250
BsmAI	GTCTC	3 cut(s)	50, 85, 129
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	4 cut(s)	206, 212, 243, 665
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	554, 563
BspACI	CCGC	6 cut(s)	55, 62, 157, 177, 285, 625
BspANI	GGCC	4 cut(s)	206, 212, 243, 665
BspCNI	CTCAG	1 cut(s)	139
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	190, 255, 377, 434
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	3 cut(s)	188, 253, 432
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	108, 207, 704
BssMI	GATC	2 cut(s)	554, 563
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	110, 706
Bst4CI	ACNGT	3 cut(s)	99, 239, 574
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	290, 345
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	118, 714
BstKTI	GATC	2 cut(s)	557, 566
BstMAI	GTCTC	3 cut(s)	50, 85, 129
BstMBI	GATC	2 cut(s)	554, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 439
BstNI	CCWGG	2 cut(s)	110, 706
BstNSI	RCATGY	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	108, 704
BstSFI	CTRYAG	2 cut(s)	336, 370
BstV1I	GCAGC	2 cut(s)	352, 484
BstX2I	RGATCY	2 cut(s)	554, 563
BstYI	RGATCY	2 cut(s)	554, 563
BsuRI	GGCC	4 cut(s)	206, 212, 243, 665
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	118, 714
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	290, 345
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	204, 211, 375, 664
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	556, 565
DpnII	GATC	2 cut(s)	554, 563
EaeI	YGGCCR	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	104, 333
Eco91I	GGTNACC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	108, 704
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	347
FaiI	YATR	3 cut(s)	345, 381, 581
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	177, 286, 366, 498
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	177, 286, 366, 498
FspBI	CTAG	2 cut(s)	42, 647
GluI	GCNGC	4 cut(s)	177, 286, 366, 498
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	206, 212, 243, 665
HapII	CCGG	3 cut(s)	163, 198, 244
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	2 cut(s)	16, 659
HpaII	CCGG	3 cut(s)	163, 198, 244
HphI	GGTGA	2 cut(s)	542, 668
Hpy166II	GTNNAC	2 cut(s)	235, 685
Hpy188I	TCNGA	3 cut(s)	129, 184, 518
Hpy188III	TCNNGA	2 cut(s)	163, 552
Hpy8I	GTNNAC	2 cut(s)	235, 685
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	3 cut(s)	36, 96, 128
HpyCH4III	ACNGT	3 cut(s)	99, 239, 574
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 439
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	554, 563
LmnI	GCTCC	3 cut(s)	69, 265, 706
Lsp1109I	GCAGC	2 cut(s)	352, 484
MaeI	CTAG	2 cut(s)	42, 647
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	102, 530, 656
MalI	GATC	2 cut(s)	556, 565
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	2 cut(s)	554, 563
MboII	GAAGA	1 cut(s)	558
MflI	RGATCY	2 cut(s)	554, 563
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	2 cut(s)	10, 653
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	6 cut(s)	413, 426, 456, 468, 600, 715
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	3 cut(s)	163, 198, 244
MspR9I	CCNGG	2 cut(s)	110, 706
MvaI	CCWGG	2 cut(s)	110, 706
MwoI	GCNNNNNNNGC	2 cut(s)	311, 439
NdeII	GATC	2 cut(s)	554, 563
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	4 cut(s)	190, 255, 377, 434
NmeAIII	GCCGAG	1 cut(s)	641
NmuCI	GTSAC	2 cut(s)	530, 656
NspI	RCATGY	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	178, 287, 367, 499
PleI	GAGTC	2 cut(s)	10, 653
PpsI	GAGTC	2 cut(s)	10, 653
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	108, 704
PspEI	GGTNACC	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	2 cut(s)	108, 704
PspN4I	GGNNCC	4 cut(s)	190, 255, 377, 434
PspPI	GGNCC	4 cut(s)	204, 211, 375, 664
PspPPI	RGGWCCY	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	554, 563
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	413, 426, 456, 468, 600, 715
SatI	GCNGC	4 cut(s)	177, 286, 366, 498
Sau3AI	GATC	2 cut(s)	554, 563
Sau96I	GGNCC	4 cut(s)	204, 211, 375, 664
SchI	GAGTC	2 cut(s)	10, 653
ScrFI	CCNGG	2 cut(s)	110, 706
SetI	ASST	9 cut(s)	81, 134, 172, 307, 462, 619, 636, 690, 703
SfcI	CTRYAG	2 cut(s)	336, 370
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SpeI	ACTAGT	1 cut(s)	646
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	6 cut(s)	55, 62, 157, 177, 285, 625
SspMI	CTAG	2 cut(s)	42, 647
StyD4I	CCNGG	2 cut(s)	108, 704
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	99, 239, 574
TaiI	ACGT	1 cut(s)	81
TasI	AATT	1 cut(s)	463
TauI	GCSGC	2 cut(s)	179, 288
Tru1I	TTAA	6 cut(s)	413, 426, 456, 468, 600, 715
Tru9I	TTAA	6 cut(s)	413, 426, 456, 468, 600, 715
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	530, 656
TseI	GCWGC	2 cut(s)	365, 497
Tsp45I	GTSAC	2 cut(s)	530, 656
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	375
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	2 cut(s)	42, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.