Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

14763032 .. 14763559

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCGGGCGCTTTTGCATAACGTCTCAAGAATTCAAGTTGAGGGTGATTCTCTTCTCATTATCAACTGCATAAAAAAAGCTTGTACCCCTCCTTGGAAACTTAAGGCCCTCATCCAAGACATTCTCAATCGGCTGCGAAGTTCGAGACCATTTCTTTCTCGCATGTTTTCGGGAGGCCAACTTTGTGGCGGATGCTATTGCCTCAACGGGTCATGGCCTCTCATGTCCCAAAGTTTGGTTTGGATGCTGTTCCGGCTGCGGCTTCGTCCGCCTTGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

93

Amino Acids

10.62

Weight (kDa)

10.01

Isoelectric Point (pI)

67.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	4 cut(s)	4, 189, 259, 269
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	93, 235
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	28, 139
AoxI	GGCC	3 cut(s)	105, 175, 215
ApeKI	GCWGC	3 cut(s)	133, 256, 276
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	120, 243, 263
BcoDI	GTCTC	2 cut(s)	28, 139
BfaI	CTAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	4 cut(s)	134, 257, 260, 277
BlsI	GCNGC	4 cut(s)	135, 258, 261, 278
BmgT120I	GGNCC	1 cut(s)	106
BmsI	GCATC	2 cut(s)	182, 234
BpuEI	CTTGAG	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 235
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	111, 197, 249
BseLI	CCNNNNNNNGG	2 cut(s)	93, 235
BseXI	GCAGC	3 cut(s)	120, 243, 263
BshFI	GGCC	3 cut(s)	107, 177, 217
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	93, 235
BsmAI	GTCTC	2 cut(s)	28, 139
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	107, 177, 217
Bso31I	GGTCTC	1 cut(s)	139
BspACI	CCGC	4 cut(s)	4, 189, 259, 269
BspANI	GGCC	3 cut(s)	107, 177, 217
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	111, 197, 249
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	2 cut(s)	28, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 268
BstNSI	RCATGY	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	120, 243, 263
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	107, 177, 217
BtsCI	GGATG	3 cut(s)	111, 197, 249
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	3 cut(s)	163, 213, 223
CviJI	RGCY	7 cut(s)	80, 107, 133, 177, 217, 256, 262
CviKI_1	RGCY	7 cut(s)	80, 107, 133, 177, 217, 256, 262
CviQI	GTAC	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	2 cut(s)	204, 258
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	166, 216, 226
FaiI	YATR	5 cut(s)	18, 71, 164, 214, 224
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	162, 212, 222
Fnu4HI	GCNGC	4 cut(s)	134, 257, 260, 277
FokI	GGATG	3 cut(s)	98, 204, 256
Fsp4HI	GCNGC	4 cut(s)	134, 257, 260, 277
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	134, 257, 260, 277
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	107, 177, 217
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	166, 216, 226
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	56
Hpy188III	TCNNGA	3 cut(s)	27, 144, 171
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	16, 69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 268
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	166, 216, 226
HspAI	GCGC	1 cut(s)	8
LpnPI	CCDG	1 cut(s)	266
Lsp1109I	GCAGC	3 cut(s)	120, 243, 263
LweI	GCATC	2 cut(s)	182, 234
MaeI	CTAG	1 cut(s)	280
MaeII	ACGT	1 cut(s)	21
MboII	GAAGA	1 cut(s)	44
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	6 cut(s)	34, 99, 119, 167, 212, 228
MseI	TTAA	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	253, 268
NlaIII	CATG	3 cut(s)	166, 216, 226
NspI	RCATGY	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	135, 258, 261, 278
PspPI	GGNCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	4 cut(s)	134, 257, 260, 277
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	2 cut(s)	24, 82
SfaNI	GCATC	2 cut(s)	182, 234
SmlI	CTYRAG	2 cut(s)	25, 101
SmoI	CTYRAG	2 cut(s)	25, 101
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	4 cut(s)	4, 189, 259, 269
SspMI	CTAG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	30
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	3 cut(s)	133, 256, 276
Van91I	CCANNNNNTGG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.