Rorug04G0101200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001617
Physical Location & Seq
Reverse (-)
15825998 .. 15826303
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0101200.1

Sequence Viewer

Length: 306 bp
ATGGTTGAATCTGATTCTATAGTGCTCGTTCACCTTATTCATAGTAATGATGTGGACTACCATCCTTTAGGTACATTATTGGCAAATTGCCAGGCGCCTCTTATACATACTTTTGACTGCTTTGTGATTCATCGCATACATCGGAAGAGTAACATGGTGGTTCATGGTCTTGCAAAGAGCAGCACTGACGAAAAATTAGATATGTGCAAACTTACTACAATGTCTCACTTCATTGCACAAGTTGTGCTTGATAATGCTATGGGCCTTATGAGGTCTAAAGCTGTAACTACAGCTAGTAGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

101

Amino Acids

11.16

Weight (kDa)

6.69

Isoelectric Point (pI)

25.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 2 cut(s) 73, 301
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 281, 293
AluI AGCT 2 cut(s) 281, 293
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 228
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 23
BanI GGYRCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 18, 288
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 27
BspANI GGCC 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 228
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 18, 288
BstV1I GCAGC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 72, 300
CviAII CATG 2 cut(s) 154, 164
CviJI RGCY 3 cut(s) 264, 281, 293
CviKI_1 RGCY 3 cut(s) 264, 281, 293
CviQI GTAC 2 cut(s) 72, 300
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
FaeI CATG 2 cut(s) 157, 167
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 2 cut(s) 153, 163
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 157, 167
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 3 cut(s) 8, 14, 127
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 31, 55
Hpy188I TCNGA 2 cut(s) 13, 144
Hpy8I GTNNAC 2 cut(s) 31, 55
HpyCH4V TGCA 3 cut(s) 173, 207, 236
HpyF3I CTNAG 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 157, 167
HspAI GCGC 1 cut(s) 95
KasI GGCGCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 77, 104
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 149, 283
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 85, 194
Mly113I GGCGCC 1 cut(s) 95
MnlI CCTC 2 cut(s) 108, 264
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NarI GGCGCC 1 cut(s) 95
NlaIII CATG 2 cut(s) 157, 167
NlaIV GGNNCC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 8, 14, 127
PkrI GCNGC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 262
RsaI GTAC 2 cut(s) 73, 301
RsaNI GTAC 2 cut(s) 72, 300
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 36, 73, 275, 283, 295
SfcI CTRYAG 2 cut(s) 18, 288
SfoI GGCGCC 1 cut(s) 96
SgeI CNNG 8 cut(s) 38, 103, 104, 166, 176, 182, 251, 260
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 85, 194
SspDI GGCGCC 1 cut(s) 94
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 90
TasI AATT 2 cut(s) 85, 194
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 3 cut(s) 8, 14, 127
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 4 cut(s) 29, 119, 152, 220
TspRI CASTG 1 cut(s) 190
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.