Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

10470501 .. 10471145

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCTCTACATCGTCCCAGAATAATCATGAGGCTGCTACCAAGGGACGAGACGCAGCAGAAGCCTATTTCAAGCTCGGAAACTTGGACTCTGCAATCAATGAAGCCATGGAAGCTAAAACCCACGACCCGGATTTGCTCTATATCGACAATTTCATCACAGCTTACAGGATTCACAAAGCCGTGTCAGAGAAGAAAAGCTGGTACGAGGTTCTCGGCATCCCCGAAACAGCCGACTCTCAAACCATTAAGAAACAATACAAGGAATTGGCACTAGTTGTGCACCCCGACAAGAACAGCTCTCTCACCGCCGACGGTGCTTTCAGGCATGTCAAAACCGCCTTGGACATTCTCTCCGACCCCCAGCAAAAGGAGGATTACGACAAATCATTGAGTCGTGGTGGTTCTGGTAAGTCTTTTTCCGACAGGAATCGTACACAGTTTCATAGGTTTAATGATGATGATGATTATTTTCAGAAAGCTGGGTGCAAGAACAAACGGGATAGGACAGATTGGAAGACTAGGGGCAAAGCCAAAAGGGCCAAGACTGGTAGAGTGAGAGATTGGGATTATTTCACAAGAAGAAGACCAGCGAATGCCCATGAGCCAAAAATATTACCAAATATCGCCAATTTTGTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.49

Weight (kDa)

9.42

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	68 - 128	1.8e-20	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	309, 339
AfaI	GTAC	2 cut(s)	206, 436
AfiI	CCNNNNNNNGG	2 cut(s)	130, 370
AgsI	TTSAA	1 cut(s)	73
AhlI	ACTAGT	1 cut(s)	274
AluBI	AGCT	6 cut(s)	76, 116, 164, 201, 300, 482
AluI	AGCT	6 cut(s)	76, 116, 164, 201, 300, 482
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	3, 540
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	35, 56
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	524, 592
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	22, 68
BceAI	ACGGC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	2 cut(s)	275, 522
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	2 cut(s)	36, 57
BlsI	GCNGC	2 cut(s)	37, 58
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	524, 592
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	42, 108, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 370
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	42, 108, 342
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	130, 370
BseNI	ACTGG	1 cut(s)	553
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	22, 68
BseYI	CCCAGC	2 cut(s)	363, 482
BshFI	GGCC	2 cut(s)	5, 542
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	130, 370
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	5, 542
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	309, 339
BspANI	GGCC	2 cut(s)	5, 542
BspHI	TCATGA	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	42, 108, 342
BssT1I	CCWWGG	3 cut(s)	42, 108, 342
Bst4CI	ACNGT	2 cut(s)	317, 441
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 539
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	22, 68
BstV2I	GAAGAC	2 cut(s)	524, 592
BsuRI	GGCC	2 cut(s)	5, 542
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	219
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	540
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	205, 435
CviAII	CATG	4 cut(s)	29, 109, 329, 602
CviQI	GTAC	2 cut(s)	205, 435
Eco130I	CCWWGG	3 cut(s)	42, 108, 342
EcoT14I	CCWWGG	3 cut(s)	42, 108, 342
ErhI	CCWWGG	3 cut(s)	42, 108, 342
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	4 cut(s)	32, 112, 332, 605
FaiI	YATR	6 cut(s)	30, 110, 144, 330, 447, 603
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	28, 108, 328, 601
Fnu4HI	GCNGC	2 cut(s)	36, 57
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	36, 57
FspBI	CTAG	2 cut(s)	275, 522
GluI	GCNGC	2 cut(s)	36, 57
GsaI	CCCAGC	2 cut(s)	367, 486
HaeIII	GGCC	2 cut(s)	5, 542
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	32, 112, 332, 605
HinfI	GANTC	5 cut(s)	89, 172, 236, 394, 430
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	283, 437
Hpy188I	TCNGA	5 cut(s)	80, 190, 358, 424, 477
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	283, 437
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4III	ACNGT	2 cut(s)	317, 441
HpyCH4V	TGCA	3 cut(s)	95, 283, 489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 539
Hsp92II	CATG	4 cut(s)	32, 112, 332, 605
Lsp1109I	GCAGC	2 cut(s)	22, 68
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	275, 522
MboII	GAAGA	4 cut(s)	205, 529, 594, 597
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	151, 266, 631
MlyI	GAGTC	3 cut(s)	83, 230, 403
MmeI	TCCRAC	2 cut(s)	381, 447
MnlI	CCTC	4 cut(s)	16, 25, 202, 367
MseI	TTAA	2 cut(s)	249, 453
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	601
MwoI	GCNNNNNNNGC	4 cut(s)	62, 113, 317, 539
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	4 cut(s)	32, 112, 332, 605
NmeAIII	GCCGAG	1 cut(s)	195
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	172, 430
PkrI	GCNGC	2 cut(s)	37, 58
PleI	GAGTC	3 cut(s)	83, 230, 402
PpsI	GAGTC	3 cut(s)	83, 230, 402
PspFI	CCCAGC	2 cut(s)	363, 482
PspPI	GGNCC	1 cut(s)	540
RsaI	GTAC	2 cut(s)	206, 436
RsaNI	GTAC	2 cut(s)	205, 435
SaqAI	TTAA	2 cut(s)	249, 453
SatI	GCNGC	2 cut(s)	36, 57
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	3 cut(s)	83, 230, 403
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	8 cut(s)	78, 118, 166, 203, 213, 302, 452, 484
SfaNI	GCATC	1 cut(s)	228
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	3 cut(s)	151, 266, 631
SsiI	CCGC	2 cut(s)	309, 339
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	2 cut(s)	275, 522
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	42, 108, 342
TaaI	ACNGT	2 cut(s)	317, 441
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	151, 266, 631
TfiI	GAWTC	2 cut(s)	172, 430
Tru1I	TTAA	2 cut(s)	249, 453
Tru9I	TTAA	2 cut(s)	249, 453
TseI	GCWGC	2 cut(s)	35, 56
TspDTI	ATGAA	3 cut(s)	117, 145, 434
VneI	GTGCAC	1 cut(s)	281
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	2 cut(s)	275, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.