Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

27652363 .. 27653231

Gene Structure 869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAATATTATTGATAGCTCTTGTGCTCTTTGTGGTTCAGGGGTTGAGGACCTCAATCATTTGTTCTCTTCCTGCACGACGACTACTGTTGTGTGGAATAGTATCAACCACTTGCCTAACCCATCCTCCTTCTCTAATTTTGAGGATTGGCTGGTCTCTATTTTTCAGGGTGGCCAATCTCACACTATTGAAGACAACTTGTTGGTGTGCTGGCAGATCTGTAAGGCGAGAAACAATGTTATCTTCCGATGTGCTCAAGTCACTCCTCCAGCTATTGTTCATGCTGCAGCTGCTACAGGCTTTGACTATCGTCAAATCAACAGAAATATCTCCTCCAGCTCTCCTAGAAATCTGGAGACCGTTAATGGATTCCCCCTGCTCCTAACTGACTTTGTTGGCTCTCCCATTGTGTCTGGTGCGCGGAAGCTTCACAATTCTTCTGTTCCGTTGGCTGAATGCATAGCTTTAAAAGAAGGGCTCCTTGCTGCTAAAAGATGCAATTGTAACCAAATCAAAGTAGAAGGAGACTCTTCCCTTATCATCAACTGTGTCAAAGGGTCTTGTGGTATTCCTTGGAAACTCAAGTCCCTGATCCGAGATGTTATAGCTCTTGCCGATTCGTTTGTCAGCATCACCTTCTCTCATACATACAGAGAGGCAAACTTTCTTGCGGATGCTCTTGCTTCGGTTGGTCACTCTCTCTCCTCACTGATGTGTTGGATTGATGGGATTCCTCCCCAAGCTCTGATGGCTTTTATTATGGATTGTTTTTGTATTGGTCGCCTAAAAGGATCTTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

268

Amino Acids

28.91

Weight (kDa)

6.63

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	127 - 229	4.1e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	421
AciI	CCGC	2 cut(s)	421, 671
AclWI	GGATC	2 cut(s)	586, 799
AcoI	YGGCCR	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	191
AleI	CACNNNNGTG	1 cut(s)	712
AluBI	AGCT	8 cut(s)	18, 272, 290, 339, 427, 464, 608, 743
AluI	AGCT	8 cut(s)	18, 272, 290, 339, 427, 464, 608, 743
Alw21I	GWGCWC	2 cut(s)	28, 256
Alw26I	GTCTC	3 cut(s)	160, 350, 519
AlwI	GGATC	2 cut(s)	586, 799
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	4 cut(s)	284, 287, 290, 485
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	28, 256
BbvI	GCAGC	4 cut(s)	271, 277, 299, 472
BccI	CCATC	3 cut(s)	130, 719, 742
BcoDI	GTCTC	3 cut(s)	160, 350, 519
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	285, 294
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	4 cut(s)	285, 288, 291, 486
BlsI	GCNGC	4 cut(s)	286, 289, 292, 487
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	479
BmsI	GCATC	3 cut(s)	485, 639, 664
BoxI	GACNNNNGTC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	3 cut(s)	252, 319, 374
BpuEI	CTTGAG	2 cut(s)	240, 566
BsaI	GGTCTC	2 cut(s)	160, 350
BsaJI	CCNNGG	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 686, 716
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	2 cut(s)	122, 679
BseRI	GAGGAG	3 cut(s)	255, 322, 694
BseXI	GCAGC	4 cut(s)	271, 277, 299, 472
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	28, 256
BslFI	GGGAC	1 cut(s)	571
BsmAI	GTCTC	3 cut(s)	160, 350, 519
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	2 cut(s)	160, 350
Bsp1286I	GDGCHC	3 cut(s)	28, 256, 480
Bsp143I	GATC	3 cut(s)	216, 591, 791
BspACI	CCGC	2 cut(s)	421, 671
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	479
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	586, 799
BspTNI	GGTCTC	2 cut(s)	160, 350
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	3 cut(s)	216, 591, 791
BssT1I	CCWWGG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	88, 361, 548
Bst6I	CTCTTC	2 cut(s)	73, 535
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	122, 679
BstFNI	CGCG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	3 cut(s)	219, 594, 794
BstMAI	GTCTC	3 cut(s)	160, 350, 519
BstMBI	GATC	3 cut(s)	216, 591, 791
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 749
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSFI	CTRYAG	2 cut(s)	285, 294
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	271, 277, 299, 472
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	216, 791
BstYI	RGATCY	2 cut(s)	216, 791
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	122, 679
BtsIMutI	CAGTG	1 cut(s)	707
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	281
DpnI	GATC	3 cut(s)	218, 593, 793
DpnII	GATC	3 cut(s)	216, 591, 791
DraI	TTTAAA	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	73, 535
EarI	CTCTTC	2 cut(s)	73, 535
Eco130I	CCWWGG	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	2 cut(s)	160, 350
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	282, 461, 605, 645, 649, 761
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	285, 288, 291, 486
FokI	GGATG	2 cut(s)	109, 686
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	285, 288, 291, 486
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	285, 288, 291, 486
GsuI	CTGGAG	3 cut(s)	252, 319, 374
HaeIII	GGCC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	4 cut(s)	369, 527, 617, 730
HphI	GGTGA	1 cut(s)	625
Hpy188I	TCNGA	3 cut(s)	248, 596, 747
Hpy188III	TCNNGA	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	139, 467, 515, 646
HpyCH4III	ACNGT	3 cut(s)	88, 361, 548
HpyCH4V	TGCA	4 cut(s)	75, 287, 459, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 749
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	3 cut(s)	216, 591, 791
LmnI	GCTCC	2 cut(s)	384, 483
Lsp1109I	GCAGC	4 cut(s)	271, 277, 299, 472
LweI	GCATC	3 cut(s)	485, 639, 664
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	259, 503, 692
MalI	GATC	3 cut(s)	218, 593, 793
MboI	GATC	3 cut(s)	216, 591, 791
MboII	GAAGA	6 cut(s)	60, 203, 235, 429, 522, 786
MfeI	CAATTG	1 cut(s)	499
MflI	RGATCY	2 cut(s)	216, 791
MhlI	GDGCHC	3 cut(s)	28, 256, 480
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	3 cut(s)	136, 433, 499
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	9 cut(s)	40, 62, 136, 136, 276, 343, 649, 715, 744
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	363, 467
MslI	CAYNNNNRTG	1 cut(s)	712
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	499
Mva1269I	GAATGC	1 cut(s)	461
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	2 cut(s)	290, 749
NdeII	GATC	3 cut(s)	216, 591, 791
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	479
NmuCI	GTSAC	2 cut(s)	259, 692
NsiI	ATGCAT	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	712
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	369, 617, 730
PkrI	GCNGC	4 cut(s)	286, 289, 292, 487
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PpuMI	RGGWCCY	1 cut(s)	49
PshAI	GACNNNNGTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	216, 791
PvuII	CAGCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	712
SaqAI	TTAA	2 cut(s)	363, 467
SatI	GCNGC	4 cut(s)	285, 288, 291, 486
Sau3AI	GATC	3 cut(s)	216, 591, 791
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	3 cut(s)	28, 256, 480
SfaNI	GCATC	3 cut(s)	485, 639, 664
SfcI	CTRYAG	2 cut(s)	285, 294
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	712
SmlI	CTYRAG	2 cut(s)	255, 581
SmoI	CTYRAG	2 cut(s)	255, 581
Sse9I	AATT	3 cut(s)	136, 433, 499
SsiI	CCGC	2 cut(s)	421, 671
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	3 cut(s)	88, 361, 548
TasI	AATT	3 cut(s)	136, 433, 499
TfiI	GAWTC	3 cut(s)	369, 617, 730
Tru1I	TTAA	2 cut(s)	363, 467
Tru9I	TTAA	2 cut(s)	363, 467
TscAI	CASTG	1 cut(s)	714
TseFI	GTSAC	2 cut(s)	259, 692
TseI	GCWGC	4 cut(s)	284, 287, 290, 485
Tsp45I	GTSAC	2 cut(s)	259, 692
TspDTI	ATGAA	3 cut(s)	17, 269, 786
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	49
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.