Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

50000632 .. 50000994

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0325000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATTATCCATCGGATTCATTCTGGTCACGAGCTTAATCCAACAATTCCTTGGGAGACGATCACCGGCGGTAATGCGGCCATTCCCTACACGACAAAAGGATTTCGAGTGTTCAAGCTTGAACGTGATCCTCATCATCCTCAATGGGTGGAGGTTTTCGACCTTGGTGATCGGATACTGTTTGTCAGTAGGTCCGGTTGCAAACTCATCTCCGCCACAAGTGATGCCCTTAATTATAATCCAAATGGAGATCAGGCGCTACGTCTTGAAAGAAACTGTATCTACTTTGCTTTCGACAATTTTTGTTTAGCTAGCTTCACCCTCAAGCGGTCACGACTTTGGGATGTTTTCCTTGACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

120

Amino Acids

13.85

Weight (kDa)

7.79

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	29 - 99	3e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AciI	CCGC	4 cut(s)	69, 77, 213, 328
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	115, 122, 269
AluBI	AGCT	4 cut(s)	34, 118, 311, 315
AluI	AGCT	4 cut(s)	34, 118, 311, 315
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	3 cut(s)	55, 179, 310
AsuNHI	GCTAGC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	29
BccI	CCATC	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	50, 163
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	50, 163
BseGI	GGATG	2 cut(s)	136, 349
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	66, 195
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	60, 127, 169, 250
BspACI	CCGC	4 cut(s)	69, 77, 213, 328
BspANI	GGCC	1 cut(s)	80
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	50, 163
BssMI	GATC	4 cut(s)	60, 127, 169, 250
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	50, 163
Bst2BI	CACGAG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	180, 278
BstC8I	GCNNGC	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	136, 349
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	63, 130, 172, 253
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	4 cut(s)	60, 127, 169, 250
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	136, 349
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	192
CviJI	RGCY	5 cut(s)	34, 80, 118, 311, 315
CviKI_1	RGCY	5 cut(s)	34, 80, 118, 311, 315
DpnI	GATC	4 cut(s)	62, 129, 171, 252
DpnII	GATC	4 cut(s)	60, 127, 169, 250
EaeI	YGGCCR	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	50, 163
Eco47I	GGWCC	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	50, 163
ErhI	CCWWGG	2 cut(s)	50, 163
Esp3I	CGTCTC	1 cut(s)	50
FaiI	YATR	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	123, 356
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	66, 195
HhaI	GCGC	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	66, 195
HphI	GGTGA	3 cut(s)	55, 179, 310
Hpy188I	TCNGA	2 cut(s)	15, 174
Hpy188III	TCNNGA	3 cut(s)	29, 266, 333
HpyCH4III	ACNGT	2 cut(s)	180, 278
HpyCH4IV	ACGT	2 cut(s)	124, 262
HpyCH4V	TGCA	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	124, 262
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	60, 127, 169, 250
LpnPI	CCDG	4 cut(s)	9, 79, 208, 239
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	124, 262
MaeIII	GTNAC	2 cut(s)	26, 330
MalI	GATC	4 cut(s)	62, 129, 171, 252
MboI	GATC	4 cut(s)	60, 127, 169, 250
MluCI	AATT	3 cut(s)	45, 232, 298
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	141, 145, 150, 332
MseI	TTAA	2 cut(s)	36, 231
MspI	CCGG	2 cut(s)	66, 195
NdeII	GATC	4 cut(s)	60, 127, 169, 250
NheI	GCTAGC	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	26, 330
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	36, 231
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	60, 127, 169, 250
Sau96I	GGNCC	1 cut(s)	192
SetI	ASST	9 cut(s)	36, 120, 127, 156, 165, 194, 265, 313, 317
SfaNI	GCATC	1 cut(s)	214
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	45, 232, 298
SsiI	CCGC	4 cut(s)	69, 77, 213, 328
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	50, 163
TaaI	ACNGT	2 cut(s)	180, 278
TaiI	ACGT	2 cut(s)	127, 265
TaqI	TCGA	3 cut(s)	106, 159, 294
TasI	AATT	3 cut(s)	45, 232, 298
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	36, 231
Tru9I	TTAA	2 cut(s)	36, 231
TseFI	GTSAC	2 cut(s)	26, 330
Tsp45I	GTSAC	2 cut(s)	26, 330
TspDTI	ATGAA	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.