Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

21232819 .. 21233465

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30341.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTGACATGGCGTCCTCGATTTGTGACACGTGACAATGGACAATACCCTGCTCTTTTCGTTTTCTTGCGAAATGAAAACATTTCAAGGCTCAACTTTGATGGGTATGTCCTCTCTACCTCTGGTGTTGCTAGCTTTATTATTAGAGACTCTTTTGGGATTCCCTTAGTTGCTGGTACACGTCGACTCCATGTTTCTAATGTTTTAATTGTTGAGTGTTGTGCCCTTAAAGATGGTCTCGCTGCTATCAAAAGGTTCAACTTTAAATCTATTGTAGTTGAAAGAGATTCTCTTTTAACGATCAATTGCGTTAAGAATGTTTGTAAAATCCCTTGGCGTCTCAAATCCCATGTTAGAGATGTCATTCATGTTGCTAGTGAGTTTGGTAATATTAGTTTTGGTCATGCCTTCAGAGAAGCTAATTTCTTGGCTGATGCTCTTGCAAATCTCAGGCATTGTTTGCATTCTCCGAAGATTTGGATGGGTGCGCTTCCTCCTCAAGTTGCGCAAGTATTACATTTAGATACTGTTAATATTGGCTGCCCTAAAGACGCCTCGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

9.5

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	32 - 149	5.1e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	562
Acc16I	TGCGCA	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	394
AcvI	CACGTG	1 cut(s)	32
AcyI	GRCGYC	3 cut(s)	13, 337, 552
AfaI	GTAC	1 cut(s)	178
AflIII	ACRYGT	2 cut(s)	29, 179
AgsI	TTSAA	3 cut(s)	87, 259, 281
AhdI	GACNNNNNGTC	1 cut(s)	12
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	2 cut(s)	135, 419
AluI	AGCT	2 cut(s)	135, 419
Alw26I	GTCTC	3 cut(s)	141, 242, 344
ApeKI	GCWGC	2 cut(s)	242, 540
AspLEI	GCGC	2 cut(s)	490, 508
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	226
BbrPI	CACGTG	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	229, 527
BccI	CCATC	3 cut(s)	95, 227, 475
BcoDI	GTCTC	3 cut(s)	141, 242, 344
BfaI	CTAG	2 cut(s)	132, 375
BisI	GCNGC	2 cut(s)	243, 541
BlsI	GCNGC	2 cut(s)	244, 542
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	424
BmtI	GCTAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	32
BsaHI	GRCGYC	3 cut(s)	13, 337, 552
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	229, 527
BsmAI	GTCTC	3 cut(s)	141, 242, 344
BsmBI	CGTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	462
BspOI	GCTAGC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	300
BssNI	GRCGYC	3 cut(s)	13, 337, 552
BssT1I	CCWWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	529
BstACI	GRCGYC	3 cut(s)	13, 337, 552
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	166, 449
BstF5I	GGATG	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	490, 508
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	3 cut(s)	141, 242, 344
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	229, 527
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	490, 508
CseI	GACGC	2 cut(s)	2, 326
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	5 cut(s)	9, 191, 350, 368, 404
CviJI	RGCY	5 cut(s)	91, 135, 419, 431, 540
CviKI_1	RGCY	5 cut(s)	91, 135, 419, 431, 540
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	166, 449
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DraI	TTTAAA	1 cut(s)	265
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	5 cut(s)	12, 194, 353, 371, 407
FaiI	YATR	7 cut(s)	10, 108, 192, 351, 369, 405, 562
FatI	CATG	5 cut(s)	8, 190, 349, 367, 403
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	243, 541
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	2 cut(s)	243, 541
FspBI	CTAG	2 cut(s)	132, 375
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	2 cut(s)	489, 507
GluI	GCNGC	2 cut(s)	243, 541
HgaI	GACGC	2 cut(s)	2, 326
HhaI	GCGC	2 cut(s)	490, 508
Hin1I	GRCGYC	3 cut(s)	13, 337, 552
Hin1II	CATG	5 cut(s)	12, 194, 353, 371, 407
Hin6I	GCGC	2 cut(s)	488, 506
HinP1I	GCGC	2 cut(s)	488, 506
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	4 cut(s)	149, 160, 186, 287
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	179, 185
Hpy188I	TCNGA	2 cut(s)	413, 471
Hpy8I	GTNNAC	2 cut(s)	179, 185
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	2 cut(s)	31, 181
HpyCH4V	TGCA	2 cut(s)	443, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	2 cut(s)	166, 449
HpySE526I	ACGT	2 cut(s)	31, 181
Hsp92I	GRCGYC	3 cut(s)	13, 337, 552
Hsp92II	CATG	5 cut(s)	12, 194, 353, 371, 407
HspAI	GCGC	2 cut(s)	488, 506
Kzo9I	GATC	1 cut(s)	300
LpnPI	CCDG	4 cut(s)	63, 108, 159, 436
Lsp1109I	GCAGC	2 cut(s)	229, 527
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	132, 375
MaeII	ACGT	2 cut(s)	31, 181
MaeIII	GTNAC	3 cut(s)	4, 25, 32
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	484
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	207, 304, 421
MlyI	GAGTC	2 cut(s)	143, 180
MnlI	CCTC	5 cut(s)	27, 122, 130, 504, 507
MseI	TTAA	6 cut(s)	206, 228, 264, 296, 312, 531
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	5 cut(s)	12, 194, 353, 371, 407
NmuCI	GTSAC	3 cut(s)	4, 25, 32
NsbI	TGCGCA	1 cut(s)	507
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	160, 287
PkrI	GCNGC	2 cut(s)	244, 542
PleI	GAGTC	2 cut(s)	143, 180
PmaCI	CACGTG	1 cut(s)	32
PmlI	CACGTG	1 cut(s)	32
PpsI	GAGTC	2 cut(s)	143, 180
Ppu21I	YACGTR	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	562
PspCI	CACGTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	183
SaqAI	TTAA	6 cut(s)	206, 228, 264, 296, 312, 531
SatI	GCNGC	2 cut(s)	243, 541
Sau3AI	GATC	1 cut(s)	300
SchI	GAGTC	2 cut(s)	143, 180
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	6 cut(s)	34, 122, 137, 184, 257, 421
SfaNI	GCATC	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	3 cut(s)	207, 304, 421
SspI	AATATT	2 cut(s)	391, 535
SspMI	CTAG	2 cut(s)	132, 375
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	2 cut(s)	34, 184
TaqI	TCGA	2 cut(s)	19, 184
TasI	AATT	3 cut(s)	207, 304, 421
TfiI	GAWTC	2 cut(s)	160, 287
Tru1I	TTAA	6 cut(s)	206, 228, 264, 296, 312, 531
Tru9I	TTAA	6 cut(s)	206, 228, 264, 296, 312, 531
TseFI	GTSAC	3 cut(s)	4, 25, 32
TseI	GCWGC	2 cut(s)	242, 540
Tsp45I	GTSAC	3 cut(s)	4, 25, 32
TspDTI	ATGAA	2 cut(s)	90, 356
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	2 cut(s)	132, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.